Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30238 | 5' | -53 | NC_006273.1 | + | 208805 | 0.66 | 0.993699 |
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Target: 5'- gUGCAUggGCCcagGCGAUggcggaggaGACGGCGGGa -3' miRNA: 3'- uGCGUAagCGG---CGCUA---------UUGCUGUCCa -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 186056 | 0.66 | 0.993699 |
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Target: 5'- -aGCG-UCGuCCGCGcgGGCGGCAGc- -3' miRNA: 3'- ugCGUaAGC-GGCGCuaUUGCUGUCca -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 147539 | 0.66 | 0.993699 |
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Target: 5'- gAUGgGggCGCgC-CGAUGACGACAGGc -3' miRNA: 3'- -UGCgUaaGCG-GcGCUAUUGCUGUCCa -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 113228 | 0.66 | 0.993699 |
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Target: 5'- -aGCAUUUGCCGggcuacgggaCGAUAACGG-AGGa -3' miRNA: 3'- ugCGUAAGCGGC----------GCUAUUGCUgUCCa -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 126616 | 0.66 | 0.993699 |
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Target: 5'- uCGCucaaCGCCGCGcagAugGugGGGUu -3' miRNA: 3'- uGCGuaa-GCGGCGCua-UugCugUCCA- -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 196925 | 0.66 | 0.993699 |
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Target: 5'- gGCGgGgacgCGCCGUGcgcGAUGGCAGGa -3' miRNA: 3'- -UGCgUaa--GCGGCGCua-UUGCUGUCCa -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 199417 | 0.66 | 0.993699 |
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Target: 5'- aGCGCccgaaGCCGCGcgAGCGugcgaGCGGGg -3' miRNA: 3'- -UGCGuaag-CGGCGCuaUUGC-----UGUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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