miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 60238 0.67 0.986348
Target:  5'- cACGCGUcCaCCGCGAcugggcACGGCGGGa -3'
miRNA:   3'- -UGCGUAaGcGGCGCUau----UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 136119 0.67 0.986348
Target:  5'- cGCGCuUUUGaCCGCGA--GCGGCGGa- -3'
miRNA:   3'- -UGCGuAAGC-GGCGCUauUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 195757 0.67 0.986348
Target:  5'- aGCGCG-UCGCCGCuaaaaaagAGUGACGGGUu -3'
miRNA:   3'- -UGCGUaAGCGGCGcua-----UUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 108095 0.67 0.986348
Target:  5'- uACGCAccUGCCGCGuaacauggaaGGCGuACAGGUa -3'
miRNA:   3'- -UGCGUaaGCGGCGCua--------UUGC-UGUCCA- -5'
30238 5' -53 NC_006273.1 + 157375 0.67 0.984655
Target:  5'- cUGCG-UCGCCuGCGA---CGGCGGGUg -3'
miRNA:   3'- uGCGUaAGCGG-CGCUauuGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 84130 0.67 0.984655
Target:  5'- cGCGCcg-CGCCGCuuGAUcACGGCAGa- -3'
miRNA:   3'- -UGCGuaaGCGGCG--CUAuUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 175774 0.67 0.984655
Target:  5'- uGCGCA-UCGCCGUGGcguUGACGGCc--- -3'
miRNA:   3'- -UGCGUaAGCGGCGCU---AUUGCUGucca -5'
30238 5' -53 NC_006273.1 + 852 0.67 0.982808
Target:  5'- uUGCGggCGCuCGgGGguUGGCGGCGGGUg -3'
miRNA:   3'- uGCGUaaGCG-GCgCU--AUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 215423 0.67 0.982808
Target:  5'- -gGCGUgauGCUGUGAUGACGGCGGu- -3'
miRNA:   3'- ugCGUAag-CGGCGCUAUUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 94716 0.67 0.982808
Target:  5'- cCGUcgUCGCCuGCGGcguUGGCG-CAGGg -3'
miRNA:   3'- uGCGuaAGCGG-CGCU---AUUGCuGUCCa -5'
30238 5' -53 NC_006273.1 + 131495 0.67 0.982808
Target:  5'- cGCGCAacCGCCGCGAcuacaccgAGCuagaGCAGGUg -3'
miRNA:   3'- -UGCGUaaGCGGCGCUa-------UUGc---UGUCCA- -5'
30238 5' -53 NC_006273.1 + 37904 0.67 0.982808
Target:  5'- cGCGCAggucUCGCaCGCGuuugAGCGGgAGGc -3'
miRNA:   3'- -UGCGUa---AGCG-GCGCua--UUGCUgUCCa -5'
30238 5' -53 NC_006273.1 + 40790 0.67 0.982808
Target:  5'- uUGCGggCGCuCGgGGguUGGCGGCGGGUg -3'
miRNA:   3'- uGCGUaaGCG-GCgCU--AUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 203087 0.67 0.980797
Target:  5'- cCGCugUCGCgGCGGUcGCGAC-GGUg -3'
miRNA:   3'- uGCGuaAGCGgCGCUAuUGCUGuCCA- -5'
30238 5' -53 NC_006273.1 + 164221 0.67 0.980797
Target:  5'- gGCGCGgguggUGuuGCGcg-GCGACGGGUg -3'
miRNA:   3'- -UGCGUaa---GCggCGCuauUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 179416 0.67 0.980797
Target:  5'- -aGCugGUUCGUCGCGucAGCGGCAcGGUg -3'
miRNA:   3'- ugCG--UAAGCGGCGCuaUUGCUGU-CCA- -5'
30238 5' -53 NC_006273.1 + 2883 0.67 0.980797
Target:  5'- cACGCGUaCGCCucugguguggcGCGGUGucgUGACAGGa -3'
miRNA:   3'- -UGCGUAaGCGG-----------CGCUAUu--GCUGUCCa -5'
30238 5' -53 NC_006273.1 + 38404 0.67 0.980161
Target:  5'- uCGCcgcCGCUGCGGUGGCGGCaacagcgacgagcgAGGUg -3'
miRNA:   3'- uGCGuaaGCGGCGCUAUUGCUG--------------UCCA- -5'
30238 5' -53 NC_006273.1 + 144097 0.67 0.978616
Target:  5'- cGCGCGUg-GCCGCGcUGgcucGCGACgAGGg -3'
miRNA:   3'- -UGCGUAagCGGCGCuAU----UGCUG-UCCa -5'
30238 5' -53 NC_006273.1 + 82094 0.67 0.978616
Target:  5'- uCGCcgUUGCCGCGGcgguaguuGCGGCAGa- -3'
miRNA:   3'- uGCGuaAGCGGCGCUau------UGCUGUCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.