miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 196840 0.67 0.977694
Target:  5'- cGCGCGguggcuggguugCGCgGCGGggccGGCGACGGGg -3'
miRNA:   3'- -UGCGUaa----------GCGgCGCUa---UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 1948 0.67 0.977694
Target:  5'- cGCGCGguggcuggguugCGCgGCGGggccGGCGACGGGg -3'
miRNA:   3'- -UGCGUaa----------GCGgCGCUa---UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 162376 0.68 0.976257
Target:  5'- gGCGCuagUgGUgGCGGUGGCGGCGGcGg -3'
miRNA:   3'- -UGCGua-AgCGgCGCUAUUGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 93336 0.68 0.976257
Target:  5'- gGCGC---UGCCGCGA-GACGACGuGGa -3'
miRNA:   3'- -UGCGuaaGCGGCGCUaUUGCUGU-CCa -5'
30238 5' -53 NC_006273.1 + 117831 0.68 0.973712
Target:  5'- cCGCuacggCGCCGgGAUAcAUGACGGGc -3'
miRNA:   3'- uGCGuaa--GCGGCgCUAU-UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 178680 0.68 0.973712
Target:  5'- -aGCA--CGaCCGCGGUGGCGGC-GGUg -3'
miRNA:   3'- ugCGUaaGC-GGCGCUAUUGCUGuCCA- -5'
30238 5' -53 NC_006273.1 + 223537 0.68 0.973712
Target:  5'- gGCGCAUggUGCCGCGcguggAGCGGCAcuuGGc -3'
miRNA:   3'- -UGCGUAa-GCGGCGCua---UUGCUGU---CCa -5'
30238 5' -53 NC_006273.1 + 90364 0.68 0.973712
Target:  5'- gGCGCugggaUGCCGCGccGACGACuGGa -3'
miRNA:   3'- -UGCGuaa--GCGGCGCuaUUGCUGuCCa -5'
30238 5' -53 NC_006273.1 + 203356 0.68 0.973712
Target:  5'- cACGCAUaUGUCGCGGgugaugaguuucUGGCG-CAGGUg -3'
miRNA:   3'- -UGCGUAaGCGGCGCU------------AUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 101988 0.68 0.972093
Target:  5'- cACGCAgcaggCGCCGUGGggcugaaagaggagGACGugGGGc -3'
miRNA:   3'- -UGCGUaa---GCGGCGCUa-------------UUGCugUCCa -5'
30238 5' -53 NC_006273.1 + 17404 0.68 0.970975
Target:  5'- cGCGUAUggcCGCCggccacgagaGCGAUGACGACgaguGGGa -3'
miRNA:   3'- -UGCGUAa--GCGG----------CGCUAUUGCUG----UCCa -5'
30238 5' -53 NC_006273.1 + 37399 0.68 0.96804
Target:  5'- cACGCuca-GCCGCGAcugAGCGcCGGGg -3'
miRNA:   3'- -UGCGuaagCGGCGCUa--UUGCuGUCCa -5'
30238 5' -53 NC_006273.1 + 63862 0.68 0.9649
Target:  5'- uGCGCgagcuGUUCGCCGCGAU--CGGCuguuGGc -3'
miRNA:   3'- -UGCG-----UAAGCGGCGCUAuuGCUGu---CCa -5'
30238 5' -53 NC_006273.1 + 102288 0.69 0.961549
Target:  5'- gACGCGUg-GCgGCGGUGACaggggcaacgcgGGCAGGUc -3'
miRNA:   3'- -UGCGUAagCGgCGCUAUUG------------CUGUCCA- -5'
30238 5' -53 NC_006273.1 + 38080 0.69 0.957983
Target:  5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3'
miRNA:   3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 125579 0.69 0.957983
Target:  5'- uGCGUGUccgugUCGCCGCGGaugcaguccuUGGCGcguaGCAGGUa -3'
miRNA:   3'- -UGCGUA-----AGCGGCGCU----------AUUGC----UGUCCA- -5'
30238 5' -53 NC_006273.1 + 232973 0.69 0.957983
Target:  5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3'
miRNA:   3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 61145 0.69 0.957983
Target:  5'- aGCGUGUUguaaagguaGCCGCGcAUGACG-CAGGUg -3'
miRNA:   3'- -UGCGUAAg--------CGGCGC-UAUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 41363 0.69 0.954197
Target:  5'- cGCGCGUUCG-CGCGGccaguUGGCGGGg -3'
miRNA:   3'- -UGCGUAAGCgGCGCUauu--GCUGUCCa -5'
30238 5' -53 NC_006273.1 + 161521 0.69 0.950187
Target:  5'- cCGCAUgUCgGCCGCGcucacgcgAACGGCGGGa -3'
miRNA:   3'- uGCGUA-AG-CGGCGCua------UUGCUGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.