miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 852 0.67 0.982808
Target:  5'- uUGCGggCGCuCGgGGguUGGCGGCGGGUg -3'
miRNA:   3'- uGCGUaaGCG-GCgCU--AUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 1705 0.73 0.822227
Target:  5'- cGCGCGgaaaucCGCCGCGGcggUGGCGACuGGg -3'
miRNA:   3'- -UGCGUaa----GCGGCGCU---AUUGCUGuCCa -5'
30238 5' -53 NC_006273.1 + 1948 0.67 0.977694
Target:  5'- cGCGCGguggcuggguugCGCgGCGGggccGGCGACGGGg -3'
miRNA:   3'- -UGCGUaa----------GCGgCGCUa---UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 2032 0.66 0.993699
Target:  5'- gGCGgGgacgCGCCGUGcgcGAUGGCAGGa -3'
miRNA:   3'- -UGCgUaa--GCGGCGCua-UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 2134 0.66 0.991729
Target:  5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3'
miRNA:   3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 2883 0.67 0.980797
Target:  5'- cACGCGUaCGCCucugguguggcGCGGUGucgUGACAGGa -3'
miRNA:   3'- -UGCGUAaGCGG-----------CGCUAUu--GCUGUCCa -5'
30238 5' -53 NC_006273.1 + 15683 0.72 0.869746
Target:  5'- gACGCGUUCGUcgacgCGCGAgGGCGcagaGCGGGUg -3'
miRNA:   3'- -UGCGUAAGCG-----GCGCUaUUGC----UGUCCA- -5'
30238 5' -53 NC_006273.1 + 17404 0.68 0.970975
Target:  5'- cGCGUAUggcCGCCggccacgagaGCGAUGACGACgaguGGGa -3'
miRNA:   3'- -UGCGUAa--GCGG----------CGCUAUUGCUG----UCCa -5'
30238 5' -53 NC_006273.1 + 21466 0.67 0.986348
Target:  5'- gUGCGUUCGCUgGUGGUGgacgcacgcaGCGGuCAGGUg -3'
miRNA:   3'- uGCGUAAGCGG-CGCUAU----------UGCU-GUCCA- -5'
30238 5' -53 NC_006273.1 + 37399 0.68 0.96804
Target:  5'- cACGCuca-GCCGCGAcugAGCGcCGGGg -3'
miRNA:   3'- -UGCGuaagCGGCGCUa--UUGCuGUCCa -5'
30238 5' -53 NC_006273.1 + 37904 0.67 0.982808
Target:  5'- cGCGCAggucUCGCaCGCGuuugAGCGGgAGGc -3'
miRNA:   3'- -UGCGUa---AGCG-GCGCua--UUGCUgUCCa -5'
30238 5' -53 NC_006273.1 + 38080 0.69 0.957983
Target:  5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3'
miRNA:   3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 38404 0.67 0.980161
Target:  5'- uCGCcgcCGCUGCGGUGGCGGCaacagcgacgagcgAGGUg -3'
miRNA:   3'- uGCGuaaGCGGCGCUAUUGCUG--------------UCCA- -5'
30238 5' -53 NC_006273.1 + 39120 0.69 0.94595
Target:  5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3'
miRNA:   3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 40790 0.67 0.982808
Target:  5'- uUGCGggCGCuCGgGGguUGGCGGCGGGUg -3'
miRNA:   3'- uGCGUaaGCG-GCgCU--AUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 41363 0.69 0.954197
Target:  5'- cGCGCGUUCG-CGCGGccaguUGGCGGGg -3'
miRNA:   3'- -UGCGUAAGCgGCGCUauu--GCUGUCCa -5'
30238 5' -53 NC_006273.1 + 42341 0.66 0.990576
Target:  5'- uGCGUAgcUCGCUGC--UGACGAgCAGGUc -3'
miRNA:   3'- -UGCGUa-AGCGGCGcuAUUGCU-GUCCA- -5'
30238 5' -53 NC_006273.1 + 46083 0.66 0.991729
Target:  5'- cCGCAggUGCCGCGGUGuACGucgcucuacAUAGGa -3'
miRNA:   3'- uGCGUaaGCGGCGCUAU-UGC---------UGUCCa -5'
30238 5' -53 NC_006273.1 + 54884 0.7 0.915635
Target:  5'- aACGUGUUCGCgGCGAcGGCGAacuaacCAGGc -3'
miRNA:   3'- -UGCGUAAGCGgCGCUaUUGCU------GUCCa -5'
30238 5' -53 NC_006273.1 + 60238 0.67 0.986348
Target:  5'- cACGCGUcCaCCGCGAcugggcACGGCGGGa -3'
miRNA:   3'- -UGCGUAaGcGGCGCUau----UGCUGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.