miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 175774 0.67 0.984655
Target:  5'- uGCGCA-UCGCCGUGGcguUGACGGCc--- -3'
miRNA:   3'- -UGCGUaAGCGGCGCU---AUUGCUGucca -5'
30238 5' -53 NC_006273.1 + 176951 0.69 0.950187
Target:  5'- uCGgGUUUGCCGCGcu-GCGAguGGUu -3'
miRNA:   3'- uGCgUAAGCGGCGCuauUGCUguCCA- -5'
30238 5' -53 NC_006273.1 + 178680 0.68 0.973712
Target:  5'- -aGCA--CGaCCGCGGUGGCGGC-GGUg -3'
miRNA:   3'- ugCGUaaGC-GGCGCUAUUGCUGuCCA- -5'
30238 5' -53 NC_006273.1 + 179416 0.67 0.980797
Target:  5'- -aGCugGUUCGUCGCGucAGCGGCAcGGUg -3'
miRNA:   3'- ugCG--UAAGCGGCGCuaUUGCUGU-CCA- -5'
30238 5' -53 NC_006273.1 + 180506 0.71 0.909762
Target:  5'- uCGCcgUCGCCGCGAcacacguuCGACAuGGa -3'
miRNA:   3'- uGCGuaAGCGGCGCUauu-----GCUGU-CCa -5'
30238 5' -53 NC_006273.1 + 186056 0.66 0.993699
Target:  5'- -aGCG-UCGuCCGCGcgGGCGGCAGc- -3'
miRNA:   3'- ugCGUaAGC-GGCGCuaUUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 193110 0.69 0.950187
Target:  5'- aGCGCGggUCuCCgGCGGUAACGACGgcGGUg -3'
miRNA:   3'- -UGCGUa-AGcGG-CGCUAUUGCUGU--CCA- -5'
30238 5' -53 NC_006273.1 + 195757 0.67 0.986348
Target:  5'- aGCGCG-UCGCCGCuaaaaaagAGUGACGGGUu -3'
miRNA:   3'- -UGCGUaAGCGGCGcua-----UUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 196840 0.67 0.977694
Target:  5'- cGCGCGguggcuggguugCGCgGCGGggccGGCGACGGGg -3'
miRNA:   3'- -UGCGUaa----------GCGgCGCUa---UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 196925 0.66 0.993699
Target:  5'- gGCGgGgacgCGCCGUGcgcGAUGGCAGGa -3'
miRNA:   3'- -UGCgUaa--GCGGCGCua-UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 197027 0.66 0.991729
Target:  5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3'
miRNA:   3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 199417 0.66 0.993699
Target:  5'- aGCGCccgaaGCCGCGcgAGCGugcgaGCGGGg -3'
miRNA:   3'- -UGCGuaag-CGGCGCuaUUGC-----UGUCCa -5'
30238 5' -53 NC_006273.1 + 201108 0.66 0.993339
Target:  5'- -gGCAUgaggggacccgggUGUCGCGAcaugucGACGACAGGUg -3'
miRNA:   3'- ugCGUAa------------GCGGCGCUa-----UUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 202015 0.66 0.990576
Target:  5'- -gGCAcUCGCUGCGAcacgggGACGcgccGCAGGa -3'
miRNA:   3'- ugCGUaAGCGGCGCUa-----UUGC----UGUCCa -5'
30238 5' -53 NC_006273.1 + 202304 0.7 0.915635
Target:  5'- gACGagg-CGCgGCGAUGACGAgCAGGc -3'
miRNA:   3'- -UGCguaaGCGgCGCUAUUGCU-GUCCa -5'
30238 5' -53 NC_006273.1 + 203087 0.67 0.980797
Target:  5'- cCGCugUCGCgGCGGUcGCGAC-GGUg -3'
miRNA:   3'- uGCGuaAGCGgCGCUAuUGCUGuCCA- -5'
30238 5' -53 NC_006273.1 + 203356 0.68 0.973712
Target:  5'- cACGCAUaUGUCGCGGgugaugaguuucUGGCG-CAGGUg -3'
miRNA:   3'- -UGCGUAaGCGGCGCU------------AUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 205179 0.66 0.991395
Target:  5'- cACGC--UgGCCGCGGUGAgGACAagaagacggagcguGGUg -3'
miRNA:   3'- -UGCGuaAgCGGCGCUAUUgCUGU--------------CCA- -5'
30238 5' -53 NC_006273.1 + 208805 0.66 0.993699
Target:  5'- gUGCAUggGCCcagGCGAUggcggaggaGACGGCGGGa -3'
miRNA:   3'- uGCGUAagCGG---CGCUA---------UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 213120 0.71 0.903656
Target:  5'- aGCGCGUg-GCUGCGAUGgaGCGGCAcgauGGUg -3'
miRNA:   3'- -UGCGUAagCGGCGCUAU--UGCUGU----CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.