Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30238 | 5' | -53 | NC_006273.1 | + | 215423 | 0.67 | 0.982808 |
Target: 5'- -gGCGUgauGCUGUGAUGACGGCGGu- -3' miRNA: 3'- ugCGUAag-CGGCGCUAUUGCUGUCca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 219190 | 0.66 | 0.990576 |
Target: 5'- cACGCAUUUGCCuagcaCGAUAagGCGuuCGGGg -3' miRNA: 3'- -UGCGUAAGCGGc----GCUAU--UGCu-GUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 222881 | 1.07 | 0.012286 |
Target: 5'- cACGCAUUCGCCGCGAUAACGACAGGUc -3' miRNA: 3'- -UGCGUAAGCGGCGCUAUUGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 223537 | 0.68 | 0.973712 |
Target: 5'- gGCGCAUggUGCCGCGcguggAGCGGCAcuuGGc -3' miRNA: 3'- -UGCGUAa-GCGGCGCua---UUGCUGU---CCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 232973 | 0.69 | 0.957983 |
Target: 5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3' miRNA: 3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 233567 | 0.74 | 0.787058 |
Target: 5'- uCGCGUUgGCgCGCcaacaguaaGGUGACGACAGGUu -3' miRNA: 3'- uGCGUAAgCG-GCG---------CUAUUGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 234013 | 0.69 | 0.94595 |
Target: 5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3' miRNA: 3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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