miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 78212 0.7 0.936782
Target:  5'- cGCGguUUCGCCGCcGGgaaaGACGGGc -3'
miRNA:   3'- -UGCguAAGCGGCG-CUauugCUGUCCa -5'
30238 5' -53 NC_006273.1 + 77028 0.71 0.883972
Target:  5'- uGCGCA--CGCCGCGcgAACGACGcucGGc -3'
miRNA:   3'- -UGCGUaaGCGGCGCuaUUGCUGU---CCa -5'
30238 5' -53 NC_006273.1 + 71798 0.71 0.909762
Target:  5'- -gGCAgcCGCgGCGGUGGCGACAacGGg -3'
miRNA:   3'- ugCGUaaGCGgCGCUAUUGCUGU--CCa -5'
30238 5' -53 NC_006273.1 + 69436 0.7 0.921274
Target:  5'- -gGCAUggcggCGCCGCuGUAGCGGCGGa- -3'
miRNA:   3'- ugCGUAa----GCGGCGcUAUUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 68748 0.74 0.787058
Target:  5'- gGCGCGUccaCGCCGCGGgu-CGACAuGGUc -3'
miRNA:   3'- -UGCGUAa--GCGGCGCUauuGCUGU-CCA- -5'
30238 5' -53 NC_006273.1 + 63862 0.68 0.9649
Target:  5'- uGCGCgagcuGUUCGCCGCGAU--CGGCuguuGGc -3'
miRNA:   3'- -UGCG-----UAAGCGGCGCUAuuGCUGu---CCa -5'
30238 5' -53 NC_006273.1 + 61145 0.69 0.957983
Target:  5'- aGCGUGUUguaaagguaGCCGCGcAUGACG-CAGGUg -3'
miRNA:   3'- -UGCGUAAg--------CGGCGC-UAUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 60238 0.67 0.986348
Target:  5'- cACGCGUcCaCCGCGAcugggcACGGCGGGa -3'
miRNA:   3'- -UGCGUAaGcGGCGCUau----UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 54884 0.7 0.915635
Target:  5'- aACGUGUUCGCgGCGAcGGCGAacuaacCAGGc -3'
miRNA:   3'- -UGCGUAAGCGgCGCUaUUGCU------GUCCa -5'
30238 5' -53 NC_006273.1 + 46083 0.66 0.991729
Target:  5'- cCGCAggUGCCGCGGUGuACGucgcucuacAUAGGa -3'
miRNA:   3'- uGCGUaaGCGGCGCUAU-UGC---------UGUCCa -5'
30238 5' -53 NC_006273.1 + 42341 0.66 0.990576
Target:  5'- uGCGUAgcUCGCUGC--UGACGAgCAGGUc -3'
miRNA:   3'- -UGCGUa-AGCGGCGcuAUUGCU-GUCCA- -5'
30238 5' -53 NC_006273.1 + 41363 0.69 0.954197
Target:  5'- cGCGCGUUCG-CGCGGccaguUGGCGGGg -3'
miRNA:   3'- -UGCGUAAGCgGCGCUauu--GCUGUCCa -5'
30238 5' -53 NC_006273.1 + 40790 0.67 0.982808
Target:  5'- uUGCGggCGCuCGgGGguUGGCGGCGGGUg -3'
miRNA:   3'- uGCGUaaGCG-GCgCU--AUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 39120 0.69 0.94595
Target:  5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3'
miRNA:   3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 38404 0.67 0.980161
Target:  5'- uCGCcgcCGCUGCGGUGGCGGCaacagcgacgagcgAGGUg -3'
miRNA:   3'- uGCGuaaGCGGCGCUAUUGCUG--------------UCCA- -5'
30238 5' -53 NC_006273.1 + 38080 0.69 0.957983
Target:  5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3'
miRNA:   3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 37904 0.67 0.982808
Target:  5'- cGCGCAggucUCGCaCGCGuuugAGCGGgAGGc -3'
miRNA:   3'- -UGCGUa---AGCG-GCGCua--UUGCUgUCCa -5'
30238 5' -53 NC_006273.1 + 37399 0.68 0.96804
Target:  5'- cACGCuca-GCCGCGAcugAGCGcCGGGg -3'
miRNA:   3'- -UGCGuaagCGGCGCUa--UUGCuGUCCa -5'
30238 5' -53 NC_006273.1 + 21466 0.67 0.986348
Target:  5'- gUGCGUUCGCUgGUGGUGgacgcacgcaGCGGuCAGGUg -3'
miRNA:   3'- uGCGUAAGCGG-CGCUAU----------UGCU-GUCCA- -5'
30238 5' -53 NC_006273.1 + 17404 0.68 0.970975
Target:  5'- cGCGUAUggcCGCCggccacgagaGCGAUGACGACgaguGGGa -3'
miRNA:   3'- -UGCGUAa--GCGG----------CGCUAUUGCUG----UCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.