miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 102288 0.69 0.961549
Target:  5'- gACGCGUg-GCgGCGGUGACaggggcaacgcgGGCAGGUc -3'
miRNA:   3'- -UGCGUAagCGgCGCUAUUG------------CUGUCCA- -5'
30238 5' -53 NC_006273.1 + 120946 0.69 0.94595
Target:  5'- gGCGC---CGCCGcCGGUGACG-CGGGg -3'
miRNA:   3'- -UGCGuaaGCGGC-GCUAUUGCuGUCCa -5'
30238 5' -53 NC_006273.1 + 234013 0.69 0.94595
Target:  5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3'
miRNA:   3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 138755 0.69 0.950187
Target:  5'- cACGUAgUCGCgCGCGAaggugUGGCGGCAGcGg -3'
miRNA:   3'- -UGCGUaAGCG-GCGCU-----AUUGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 193110 0.69 0.950187
Target:  5'- aGCGCGggUCuCCgGCGGUAACGACGgcGGUg -3'
miRNA:   3'- -UGCGUa-AGcGG-CGCUAUUGCUGU--CCA- -5'
30238 5' -53 NC_006273.1 + 41363 0.69 0.954197
Target:  5'- cGCGCGUUCG-CGCGGccaguUGGCGGGg -3'
miRNA:   3'- -UGCGUAAGCgGCGCUauu--GCUGUCCa -5'
30238 5' -53 NC_006273.1 + 232973 0.69 0.957983
Target:  5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3'
miRNA:   3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 125579 0.69 0.957983
Target:  5'- uGCGUGUccgugUCGCCGCGGaugcaguccuUGGCGcguaGCAGGUa -3'
miRNA:   3'- -UGCGUA-----AGCGGCGCU----------AUUGC----UGUCCA- -5'
30238 5' -53 NC_006273.1 + 61145 0.69 0.957983
Target:  5'- aGCGUGUUguaaagguaGCCGCGcAUGACG-CAGGUg -3'
miRNA:   3'- -UGCGUAAg--------CGGCGC-UAUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 78212 0.7 0.936782
Target:  5'- cGCGguUUCGCCGCcGGgaaaGACGGGc -3'
miRNA:   3'- -UGCguAAGCGGCG-CUauugCUGUCCa -5'
30238 5' -53 NC_006273.1 + 136628 0.7 0.931848
Target:  5'- aGCGCGUUUGuuGCGcg-GCGACgAGGa -3'
miRNA:   3'- -UGCGUAAGCggCGCuauUGCUG-UCCa -5'
30238 5' -53 NC_006273.1 + 140405 0.7 0.926679
Target:  5'- cACGUGgaaGCCGUGcu-GCGACAGGUg -3'
miRNA:   3'- -UGCGUaagCGGCGCuauUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 68748 0.74 0.787058
Target:  5'- gGCGCGUccaCGCCGCGGgu-CGACAuGGUc -3'
miRNA:   3'- -UGCGUAa--GCGGCGCUauuGCUGU-CCA- -5'
30238 5' -53 NC_006273.1 + 112553 0.73 0.80495
Target:  5'- gACGCggUCGCCGCGucAGCGGCcgccGGUg -3'
miRNA:   3'- -UGCGuaAGCGGCGCuaUUGCUGu---CCA- -5'
30238 5' -53 NC_006273.1 + 1705 0.73 0.822227
Target:  5'- cGCGCGgaaaucCGCCGCGGcggUGGCGACuGGg -3'
miRNA:   3'- -UGCGUaa----GCGGCGCU---AUUGCUGuCCa -5'
30238 5' -53 NC_006273.1 + 77028 0.71 0.883972
Target:  5'- uGCGCA--CGCCGCGcgAACGACGcucGGc -3'
miRNA:   3'- -UGCGUaaGCGGCGCuaUUGCUGU---CCa -5'
30238 5' -53 NC_006273.1 + 140671 0.71 0.883972
Target:  5'- uGCGCcaaCGCCgcagGCGAcGACGGCGGGUg -3'
miRNA:   3'- -UGCGuaaGCGG----CGCUaUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 213120 0.71 0.903656
Target:  5'- aGCGCGUg-GCUGCGAUGgaGCGGCAcgauGGUg -3'
miRNA:   3'- -UGCGUAagCGGCGCUAU--UGCUGU----CCA- -5'
30238 5' -53 NC_006273.1 + 54884 0.7 0.915635
Target:  5'- aACGUGUUCGCgGCGAcGGCGAacuaacCAGGc -3'
miRNA:   3'- -UGCGUAAGCGgCGCUaUUGCU------GUCCa -5'
30238 5' -53 NC_006273.1 + 69436 0.7 0.921274
Target:  5'- -gGCAUggcggCGCCGCuGUAGCGGCGGa- -3'
miRNA:   3'- ugCGUAa----GCGGCGcUAUUGCUGUCca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.