Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30238 | 5' | -53 | NC_006273.1 | + | 93336 | 0.68 | 0.976257 |
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Target: 5'- gGCGC---UGCCGCGA-GACGACGuGGa -3' miRNA: 3'- -UGCGuaaGCGGCGCUaUUGCUGU-CCa -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 203356 | 0.68 | 0.973712 |
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Target: 5'- cACGCAUaUGUCGCGGgugaugaguuucUGGCG-CAGGUg -3' miRNA: 3'- -UGCGUAaGCGGCGCU------------AUUGCuGUCCA- -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 117831 | 0.68 | 0.973712 |
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Target: 5'- cCGCuacggCGCCGgGAUAcAUGACGGGc -3' miRNA: 3'- uGCGuaa--GCGGCgCUAU-UGCUGUCCa -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 178680 | 0.68 | 0.973712 |
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Target: 5'- -aGCA--CGaCCGCGGUGGCGGC-GGUg -3' miRNA: 3'- ugCGUaaGC-GGCGCUAUUGCUGuCCA- -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 17404 | 0.68 | 0.970975 |
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Target: 5'- cGCGUAUggcCGCCggccacgagaGCGAUGACGACgaguGGGa -3' miRNA: 3'- -UGCGUAa--GCGG----------CGCUAUUGCUG----UCCa -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 38080 | 0.69 | 0.957983 |
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Target: 5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3' miRNA: 3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5' |
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| 30238 | 5' | -53 | NC_006273.1 | + | 171279 | 0.76 | 0.670674 |
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Target: 5'- cGCGCGUUgCaCCGCGGUAACGACGGc- -3' miRNA: 3'- -UGCGUAA-GcGGCGCUAUUGCUGUCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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