miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 171279 0.76 0.670674
Target:  5'- cGCGCGUUgCaCCGCGGUAACGACGGc- -3'
miRNA:   3'- -UGCGUAA-GcGGCGCUAUUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 93336 0.68 0.976257
Target:  5'- gGCGC---UGCCGCGA-GACGACGuGGa -3'
miRNA:   3'- -UGCGuaaGCGGCGCUaUUGCUGU-CCa -5'
30238 5' -53 NC_006273.1 + 82094 0.67 0.978616
Target:  5'- uCGCcgUUGCCGCGGcgguaguuGCGGCAGa- -3'
miRNA:   3'- uGCGuaAGCGGCGCUau------UGCUGUCca -5'
30238 5' -53 NC_006273.1 + 199417 0.66 0.993699
Target:  5'- aGCGCccgaaGCCGCGcgAGCGugcgaGCGGGg -3'
miRNA:   3'- -UGCGuaag-CGGCGCuaUUGC-----UGUCCa -5'
30238 5' -53 NC_006273.1 + 172214 0.71 0.890759
Target:  5'- cGCGCcggccgCGCCGCGAgacgGACGcaagguaaACAGGUg -3'
miRNA:   3'- -UGCGuaa---GCGGCGCUa---UUGC--------UGUCCA- -5'
30238 5' -53 NC_006273.1 + 84045 0.71 0.897321
Target:  5'- gGCGCcaaaugaGCCGCGA-AGCGGCGGGc -3'
miRNA:   3'- -UGCGuaag---CGGCGCUaUUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 180506 0.71 0.909762
Target:  5'- uCGCcgUCGCCGCGAcacacguuCGACAuGGa -3'
miRNA:   3'- uGCGuaAGCGGCGCUauu-----GCUGU-CCa -5'
30238 5' -53 NC_006273.1 + 202304 0.7 0.915635
Target:  5'- gACGagg-CGCgGCGAUGACGAgCAGGc -3'
miRNA:   3'- -UGCguaaGCGgCGCUAUUGCU-GUCCa -5'
30238 5' -53 NC_006273.1 + 161521 0.69 0.950187
Target:  5'- cCGCAUgUCgGCCGCGcucacgcgAACGGCGGGa -3'
miRNA:   3'- uGCGUA-AG-CGGCGCua------UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 203356 0.68 0.973712
Target:  5'- cACGCAUaUGUCGCGGgugaugaguuucUGGCG-CAGGUg -3'
miRNA:   3'- -UGCGUAaGCGGCGCU------------AUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 17404 0.68 0.970975
Target:  5'- cGCGUAUggcCGCCggccacgagaGCGAUGACGACgaguGGGa -3'
miRNA:   3'- -UGCGUAa--GCGG----------CGCUAUUGCUG----UCCa -5'
30238 5' -53 NC_006273.1 + 176951 0.69 0.950187
Target:  5'- uCGgGUUUGCCGCGcu-GCGAguGGUu -3'
miRNA:   3'- uGCgUAAGCGGCGCuauUGCUguCCA- -5'
30238 5' -53 NC_006273.1 + 233567 0.74 0.787058
Target:  5'- uCGCGUUgGCgCGCcaacaguaaGGUGACGACAGGUu -3'
miRNA:   3'- uGCGUAAgCG-GCG---------CUAUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 178680 0.68 0.973712
Target:  5'- -aGCA--CGaCCGCGGUGGCGGC-GGUg -3'
miRNA:   3'- ugCGUaaGC-GGCGCUAUUGCUGuCCA- -5'
30238 5' -53 NC_006273.1 + 88860 0.72 0.854681
Target:  5'- cCGCuacuUUCGCggaCGCGGUAGCGGCAGuGUc -3'
miRNA:   3'- uGCGu---AAGCG---GCGCUAUUGCUGUC-CA- -5'
30238 5' -53 NC_006273.1 + 39120 0.69 0.94595
Target:  5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3'
miRNA:   3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 117831 0.68 0.973712
Target:  5'- cCGCuacggCGCCGgGAUAcAUGACGGGc -3'
miRNA:   3'- uGCGuaa--GCGGCgCUAU-UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 1948 0.67 0.977694
Target:  5'- cGCGCGguggcuggguugCGCgGCGGggccGGCGACGGGg -3'
miRNA:   3'- -UGCGUaa----------GCGgCGCUa---UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 15683 0.72 0.869746
Target:  5'- gACGCGUUCGUcgacgCGCGAgGGCGcagaGCGGGUg -3'
miRNA:   3'- -UGCGUAAGCG-----GCGCUaUUGC----UGUCCA- -5'
30238 5' -53 NC_006273.1 + 71798 0.71 0.909762
Target:  5'- -gGCAgcCGCgGCGGUGGCGACAacGGg -3'
miRNA:   3'- ugCGUaaGCGgCGCUAUUGCUGU--CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.