miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 42341 0.66 0.990576
Target:  5'- uGCGUAgcUCGCUGC--UGACGAgCAGGUc -3'
miRNA:   3'- -UGCGUa-AGCGGCGcuAUUGCU-GUCCA- -5'
30238 5' -53 NC_006273.1 + 141166 0.66 0.9893
Target:  5'- cCGCGgacugCGCCGgGG-GGCGGCGGGc -3'
miRNA:   3'- uGCGUaa---GCGGCgCUaUUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 140671 0.71 0.883972
Target:  5'- uGCGCcaaCGCCgcagGCGAcGACGGCGGGUg -3'
miRNA:   3'- -UGCGuaaGCGG----CGCUaUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 213120 0.71 0.903656
Target:  5'- aGCGCGUg-GCUGCGAUGgaGCGGCAcgauGGUg -3'
miRNA:   3'- -UGCGUAagCGGCGCUAU--UGCUGU----CCA- -5'
30238 5' -53 NC_006273.1 + 112553 0.73 0.80495
Target:  5'- gACGCggUCGCCGCGucAGCGGCcgccGGUg -3'
miRNA:   3'- -UGCGuaAGCGGCGCuaUUGCUGu---CCA- -5'
30238 5' -53 NC_006273.1 + 2883 0.67 0.980797
Target:  5'- cACGCGUaCGCCucugguguggcGCGGUGucgUGACAGGa -3'
miRNA:   3'- -UGCGUAaGCGG-----------CGCUAUu--GCUGUCCa -5'
30238 5' -53 NC_006273.1 + 78212 0.7 0.936782
Target:  5'- cGCGguUUCGCCGCcGGgaaaGACGGGc -3'
miRNA:   3'- -UGCguAAGCGGCG-CUauugCUGUCCa -5'
30238 5' -53 NC_006273.1 + 120946 0.69 0.94595
Target:  5'- gGCGC---CGCCGcCGGUGACG-CGGGg -3'
miRNA:   3'- -UGCGuaaGCGGC-GCUAUUGCuGUCCa -5'
30238 5' -53 NC_006273.1 + 234013 0.69 0.94595
Target:  5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3'
miRNA:   3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5'
30238 5' -53 NC_006273.1 + 144097 0.67 0.978616
Target:  5'- cGCGCGUg-GCCGCGcUGgcucGCGACgAGGg -3'
miRNA:   3'- -UGCGUAagCGGCGCuAU----UGCUG-UCCa -5'
30238 5' -53 NC_006273.1 + 38404 0.67 0.980161
Target:  5'- uCGCcgcCGCUGCGGUGGCGGCaacagcgacgagcgAGGUg -3'
miRNA:   3'- uGCGuaaGCGGCGCUAUUGCUG--------------UCCA- -5'
30238 5' -53 NC_006273.1 + 162376 0.68 0.976257
Target:  5'- gGCGCuagUgGUgGCGGUGGCGGCGGcGg -3'
miRNA:   3'- -UGCGua-AgCGgCGCUAUUGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 90364 0.68 0.973712
Target:  5'- gGCGCugggaUGCCGCGccGACGACuGGa -3'
miRNA:   3'- -UGCGuaa--GCGGCGCuaUUGCUGuCCa -5'
30238 5' -53 NC_006273.1 + 223537 0.68 0.973712
Target:  5'- gGCGCAUggUGCCGCGcguggAGCGGCAcuuGGc -3'
miRNA:   3'- -UGCGUAa-GCGGCGCua---UUGCUGU---CCa -5'
30238 5' -53 NC_006273.1 + 37399 0.68 0.96804
Target:  5'- cACGCuca-GCCGCGAcugAGCGcCGGGg -3'
miRNA:   3'- -UGCGuaagCGGCGCUa--UUGCuGUCCa -5'
30238 5' -53 NC_006273.1 + 63862 0.68 0.9649
Target:  5'- uGCGCgagcuGUUCGCCGCGAU--CGGCuguuGGc -3'
miRNA:   3'- -UGCG-----UAAGCGGCGCUAuuGCUGu---CCa -5'
30238 5' -53 NC_006273.1 + 101988 0.68 0.972093
Target:  5'- cACGCAgcaggCGCCGUGGggcugaaagaggagGACGugGGGc -3'
miRNA:   3'- -UGCGUaa---GCGGCGCUa-------------UUGCugUCCa -5'
30238 5' -53 NC_006273.1 + 147539 0.66 0.993699
Target:  5'- gAUGgGggCGCgC-CGAUGACGACAGGc -3'
miRNA:   3'- -UGCgUaaGCG-GcGCUAUUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 196925 0.66 0.993699
Target:  5'- gGCGgGgacgCGCCGUGcgcGAUGGCAGGa -3'
miRNA:   3'- -UGCgUaa--GCGGCGCua-UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 138755 0.69 0.950187
Target:  5'- cACGUAgUCGCgCGCGAaggugUGGCGGCAGcGg -3'
miRNA:   3'- -UGCGUaAGCG-GCGCU-----AUUGCUGUC-Ca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.