miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 140671 0.71 0.883972
Target:  5'- uGCGCcaaCGCCgcagGCGAcGACGGCGGGUg -3'
miRNA:   3'- -UGCGuaaGCGG----CGCUaUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 77028 0.71 0.883972
Target:  5'- uGCGCA--CGCCGCGcgAACGACGcucGGc -3'
miRNA:   3'- -UGCGUaaGCGGCGCuaUUGCUGU---CCa -5'
30238 5' -53 NC_006273.1 + 101988 0.68 0.972093
Target:  5'- cACGCAgcaggCGCCGUGGggcugaaagaggagGACGugGGGc -3'
miRNA:   3'- -UGCGUaa---GCGGCGCUa-------------UUGCugUCCa -5'
30238 5' -53 NC_006273.1 + 223537 0.68 0.973712
Target:  5'- gGCGCAUggUGCCGCGcguggAGCGGCAcuuGGc -3'
miRNA:   3'- -UGCGUAa-GCGGCGCua---UUGCUGU---CCa -5'
30238 5' -53 NC_006273.1 + 126616 0.66 0.993699
Target:  5'- uCGCucaaCGCCGCGcagAugGugGGGUu -3'
miRNA:   3'- uGCGuaa-GCGGCGCua-UugCugUCCA- -5'
30238 5' -53 NC_006273.1 + 113228 0.66 0.993699
Target:  5'- -aGCAUUUGCCGggcuacgggaCGAUAACGG-AGGa -3'
miRNA:   3'- ugCGUAAGCGGC----------GCUAUUGCUgUCCa -5'
30238 5' -53 NC_006273.1 + 201108 0.66 0.993339
Target:  5'- -gGCAUgaggggacccgggUGUCGCGAcaugucGACGACAGGUg -3'
miRNA:   3'- ugCGUAa------------GCGGCGCUa-----UUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 197027 0.66 0.991729
Target:  5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3'
miRNA:   3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 219190 0.66 0.990576
Target:  5'- cACGCAUUUGCCuagcaCGAUAagGCGuuCGGGg -3'
miRNA:   3'- -UGCGUAAGCGGc----GCUAU--UGCu-GUCCa -5'
30238 5' -53 NC_006273.1 + 125005 0.66 0.987893
Target:  5'- uGCGCAgcagGCCGCGcagucguacGUAGCcGCGGGUg -3'
miRNA:   3'- -UGCGUaag-CGGCGC---------UAUUGcUGUCCA- -5'
30238 5' -53 NC_006273.1 + 136119 0.67 0.986348
Target:  5'- cGCGCuUUUGaCCGCGA--GCGGCGGa- -3'
miRNA:   3'- -UGCGuAAGC-GGCGCUauUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 60238 0.67 0.986348
Target:  5'- cACGCGUcCaCCGCGAcugggcACGGCGGGa -3'
miRNA:   3'- -UGCGUAaGcGGCGCUau----UGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 21466 0.67 0.986348
Target:  5'- gUGCGUUCGCUgGUGGUGgacgcacgcaGCGGuCAGGUg -3'
miRNA:   3'- uGCGUAAGCGG-CGCUAU----------UGCU-GUCCA- -5'
30238 5' -53 NC_006273.1 + 37904 0.67 0.982808
Target:  5'- cGCGCAggucUCGCaCGCGuuugAGCGGgAGGc -3'
miRNA:   3'- -UGCGUa---AGCG-GCGCua--UUGCUgUCCa -5'
30238 5' -53 NC_006273.1 + 852 0.67 0.982808
Target:  5'- uUGCGggCGCuCGgGGguUGGCGGCGGGUg -3'
miRNA:   3'- uGCGUaaGCG-GCgCU--AUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 38404 0.67 0.980161
Target:  5'- uCGCcgcCGCUGCGGUGGCGGCaacagcgacgagcgAGGUg -3'
miRNA:   3'- uGCGuaaGCGGCGCUAUUGCUG--------------UCCA- -5'
30238 5' -53 NC_006273.1 + 144097 0.67 0.978616
Target:  5'- cGCGCGUg-GCCGCGcUGgcucGCGACgAGGg -3'
miRNA:   3'- -UGCGUAagCGGCGCuAU----UGCUG-UCCa -5'
30238 5' -53 NC_006273.1 + 196840 0.67 0.977694
Target:  5'- cGCGCGguggcuggguugCGCgGCGGggccGGCGACGGGg -3'
miRNA:   3'- -UGCGUaa----------GCGgCGCUa---UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 162376 0.68 0.976257
Target:  5'- gGCGCuagUgGUgGCGGUGGCGGCGGcGg -3'
miRNA:   3'- -UGCGua-AgCGgCGCUAUUGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 90364 0.68 0.973712
Target:  5'- gGCGCugggaUGCCGCGccGACGACuGGa -3'
miRNA:   3'- -UGCGuaa--GCGGCGCuaUUGCUGuCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.