miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30239 3' -56.9 NC_006273.1 + 195823 0.66 0.931076
Target:  5'- gUCGCGGCcGcgGGGCcggagGGCCUuCGGGg -3'
miRNA:   3'- aAGCGUCGuCuaCUCGa----CUGGG-GUCC- -5'
30239 3' -56.9 NC_006273.1 + 251 0.66 0.931076
Target:  5'- -aCGCGGgcgcaAGGgagGAGUcgcgGGCCCCGGGg -3'
miRNA:   3'- aaGCGUCg----UCUa--CUCGa---CUGGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 235082 0.66 0.931076
Target:  5'- -aCGCGGgcgcaAGGgagGAGUcgcgGGCCCCGGGg -3'
miRNA:   3'- aaGCGUCg----UCUa--CUCGa---CUGGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 931 0.66 0.931076
Target:  5'- gUCGCGGCcGcgGGGCcggagGGCCUuCGGGg -3'
miRNA:   3'- aAGCGUCGuCuaCUCGa----CUGGG-GUCC- -5'
30239 3' -56.9 NC_006273.1 + 40189 0.66 0.931076
Target:  5'- -aCGCGGgcgcaAGGgagGAGUcgcgGGCCCCGGGg -3'
miRNA:   3'- aaGCGUCg----UCUa--CUCGa---CUGGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 165788 0.66 0.928019
Target:  5'- aUC-CAGCAGGUGAGCcaGGCUaaacggauucacguaCCAGGu -3'
miRNA:   3'- aAGcGUCGUCUACUCGa-CUGG---------------GGUCC- -5'
30239 3' -56.9 NC_006273.1 + 212616 0.66 0.925935
Target:  5'- -cCGCuGUAGAUcuuGCUGACCCaCAGc -3'
miRNA:   3'- aaGCGuCGUCUAcu-CGACUGGG-GUCc -5'
30239 3' -56.9 NC_006273.1 + 189328 0.66 0.925935
Target:  5'- -gCGuCGGCGGGUGGGUggccacccgcaUGAgCCCCAGu -3'
miRNA:   3'- aaGC-GUCGUCUACUCG-----------ACU-GGGGUCc -5'
30239 3' -56.9 NC_006273.1 + 61240 0.66 0.925935
Target:  5'- -gUGCAGCAGAUGc---GGgCCCAGGu -3'
miRNA:   3'- aaGCGUCGUCUACucgaCUgGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 170962 0.66 0.920565
Target:  5'- cUCGCGGcCAGGUGuGCgGguucguagcgcGCaCCCAGGa -3'
miRNA:   3'- aAGCGUC-GUCUACuCGaC-----------UG-GGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 64229 0.66 0.914966
Target:  5'- -gCGCuAGCGccGAUGAcCUGGCCCgCGGGc -3'
miRNA:   3'- aaGCG-UCGU--CUACUcGACUGGG-GUCC- -5'
30239 3' -56.9 NC_006273.1 + 120654 0.66 0.914966
Target:  5'- -aUGCGGUAGAUGucGUUGGCguCCCAGa -3'
miRNA:   3'- aaGCGUCGUCUACu-CGACUG--GGGUCc -5'
30239 3' -56.9 NC_006273.1 + 55005 0.66 0.914966
Target:  5'- cUCGUAGguGggGGGCgcgucgucgUGAUCCCGGu -3'
miRNA:   3'- aAGCGUCguCuaCUCG---------ACUGGGGUCc -5'
30239 3' -56.9 NC_006273.1 + 140739 0.66 0.909139
Target:  5'- --gGgAGgGGAaGGGCgcgGACCCCGGGu -3'
miRNA:   3'- aagCgUCgUCUaCUCGa--CUGGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 104585 0.66 0.903086
Target:  5'- gUCGCgccGGCAcGAUGcAGCUGGCCCa--- -3'
miRNA:   3'- aAGCG---UCGU-CUAC-UCGACUGGGgucc -5'
30239 3' -56.9 NC_006273.1 + 189089 0.66 0.903086
Target:  5'- -gCGCccgGGCGGcgGAGgUGGCuUCCAGGa -3'
miRNA:   3'- aaGCG---UCGUCuaCUCgACUG-GGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 203365 0.67 0.896808
Target:  5'- gUCGCGGguGAUGAGUuucUGGCg-CAGGu -3'
miRNA:   3'- aAGCGUCguCUACUCG---ACUGggGUCC- -5'
30239 3' -56.9 NC_006273.1 + 178685 0.67 0.876661
Target:  5'- cUCGUGGguGGUGGucauGUUGAUCCCGGu -3'
miRNA:   3'- aAGCGUCguCUACU----CGACUGGGGUCc -5'
30239 3' -56.9 NC_006273.1 + 37337 0.68 0.862175
Target:  5'- uUUgGCGGCAGcgGAGgUGGgCCgGGGc -3'
miRNA:   3'- -AAgCGUCGUCuaCUCgACUgGGgUCC- -5'
30239 3' -56.9 NC_006273.1 + 229858 0.68 0.862175
Target:  5'- cUUCGCAcGCGGGcUGAGCcgGACCgCguGGu -3'
miRNA:   3'- -AAGCGU-CGUCU-ACUCGa-CUGG-GguCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.