miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30239 3' -56.9 NC_006273.1 + 229858 0.68 0.862175
Target:  5'- cUUCGCAcGCGGGcUGAGCcgGACCgCguGGu -3'
miRNA:   3'- -AAGCGU-CGUCU-ACUCGa-CUGG-GguCC- -5'
30239 3' -56.9 NC_006273.1 + 112240 0.68 0.854631
Target:  5'- -gCGCGGCGG--GGGCUGGCgCgAGGa -3'
miRNA:   3'- aaGCGUCGUCuaCUCGACUGgGgUCC- -5'
30239 3' -56.9 NC_006273.1 + 7748 0.68 0.846893
Target:  5'- -cCGUAGCcgucGAUcGAGCgGGCUCCGGGg -3'
miRNA:   3'- aaGCGUCGu---CUA-CUCGaCUGGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 34940 0.68 0.838968
Target:  5'- -gCGguGgAGGUGgcGGCUGAUCCaCGGGg -3'
miRNA:   3'- aaGCguCgUCUAC--UCGACUGGG-GUCC- -5'
30239 3' -56.9 NC_006273.1 + 220804 0.68 0.838968
Target:  5'- cUCGCGGCaacAGAUGAGCUuuGACgCCGc- -3'
miRNA:   3'- aAGCGUCG---UCUACUCGA--CUGgGGUcc -5'
30239 3' -56.9 NC_006273.1 + 129472 0.68 0.830862
Target:  5'- aUCGCGGCGGcggcGUGAGCgcgaggcgucgGAgCUCGGGg -3'
miRNA:   3'- aAGCGUCGUC----UACUCGa----------CUgGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 144696 0.69 0.796779
Target:  5'- gUCaGCAGUcGGUGAGCUGGCgCCAc- -3'
miRNA:   3'- aAG-CGUCGuCUACUCGACUGgGGUcc -5'
30239 3' -56.9 NC_006273.1 + 216399 0.69 0.796779
Target:  5'- --gGCAGUAGGUccGuGC-GGCCCCAGGc -3'
miRNA:   3'- aagCGUCGUCUA--CuCGaCUGGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 95156 0.69 0.769691
Target:  5'- gUCGCGGCuu----GCUGGCCCUGGGc -3'
miRNA:   3'- aAGCGUCGucuacuCGACUGGGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 97089 0.7 0.730041
Target:  5'- cUCGUuGUGGAUGAGCgacugcgucaugGGCCCaCAGGg -3'
miRNA:   3'- aAGCGuCGUCUACUCGa-----------CUGGG-GUCC- -5'
30239 3' -56.9 NC_006273.1 + 159342 0.73 0.573109
Target:  5'- gUCGCGGCuAGGUGAGCUGugUuCUAGa -3'
miRNA:   3'- aAGCGUCG-UCUACUCGACugG-GGUCc -5'
30239 3' -56.9 NC_006273.1 + 171065 0.73 0.553385
Target:  5'- gUCGCGGCGGuugGGGCgccGAUuCCCAGGg -3'
miRNA:   3'- aAGCGUCGUCua-CUCGa--CUG-GGGUCC- -5'
30239 3' -56.9 NC_006273.1 + 223285 1.08 0.00345
Target:  5'- cUUCGCAGCAGAUGAGCUGACCCCAGGg -3'
miRNA:   3'- -AAGCGUCGUCUACUCGACUGGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.