miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30239 5' -61.7 NC_006273.1 + 86574 0.65 0.811006
Target:  5'- cGGCCgGUCGcucgcgaaaagccGUGGCAuugagacgcacggcGCCGCcGCcgGCCu -3'
miRNA:   3'- -CCGGgCAGC-------------CACUGU--------------CGGCG-CGa-CGG- -5'
30239 5' -61.7 NC_006273.1 + 125295 0.65 0.811006
Target:  5'- gGGCCCGcguuugcgucuaGGUGACucGCCGCuaacCUGCg -3'
miRNA:   3'- -CCGGGCag----------CCACUGu-CGGCGc---GACGg -5'
30239 5' -61.7 NC_006273.1 + 170602 0.66 0.806104
Target:  5'- cGCCCaGUCuGUagaccGGCAGCCGC-CcGCCg -3'
miRNA:   3'- cCGGG-CAGcCA-----CUGUCGGCGcGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 195732 0.66 0.806104
Target:  5'- gGGCUCGUUGaGaagcgGACAGUugaGCGCgucGCCg -3'
miRNA:   3'- -CCGGGCAGC-Ca----CUGUCGg--CGCGa--CGG- -5'
30239 5' -61.7 NC_006273.1 + 21410 0.66 0.806104
Target:  5'- aGGCUgG-CGGU-AUGGCUGCGC-GCCu -3'
miRNA:   3'- -CCGGgCaGCCAcUGUCGGCGCGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 181623 0.66 0.806104
Target:  5'- cGGCCCaGaCGGUGACG--UGCGCgGCg -3'
miRNA:   3'- -CCGGG-CaGCCACUGUcgGCGCGaCGg -5'
30239 5' -61.7 NC_006273.1 + 116769 0.66 0.806104
Target:  5'- cGGCCUcUCGcucucCAGCCgGCGCUGCg -3'
miRNA:   3'- -CCGGGcAGCcacu-GUCGG-CGCGACGg -5'
30239 5' -61.7 NC_006273.1 + 153258 0.66 0.806104
Target:  5'- uGGCCCGUCuGGacgcagaGCAGCgaGCGCaGCa -3'
miRNA:   3'- -CCGGGCAG-CCac-----UGUCGg-CGCGaCGg -5'
30239 5' -61.7 NC_006273.1 + 62623 0.66 0.805282
Target:  5'- cGUCUGUUGaGUGAgGaaguuucGCCGCGC-GCCa -3'
miRNA:   3'- cCGGGCAGC-CACUgU-------CGGCGCGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 126994 0.66 0.805282
Target:  5'- uGGagaCCG-CGGUGGCGGCCGgcaucaggagaaaCGCcgGUCg -3'
miRNA:   3'- -CCg--GGCaGCCACUGUCGGC-------------GCGa-CGG- -5'
30239 5' -61.7 NC_006273.1 + 201179 0.66 0.805282
Target:  5'- uGCCCGUcaaguacCGGacGCA-CCGCGCcGCCg -3'
miRNA:   3'- cCGGGCA-------GCCacUGUcGGCGCGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 213154 0.66 0.797824
Target:  5'- cGCCCGUCaucUGACAcuccguuuuccuGCCGUGaCUGCg -3'
miRNA:   3'- cCGGGCAGcc-ACUGU------------CGGCGC-GACGg -5'
30239 5' -61.7 NC_006273.1 + 64525 0.66 0.797824
Target:  5'- cGGCUCGacaUCGGUGuccCuGCCGC-CgGCCu -3'
miRNA:   3'- -CCGGGC---AGCCACu--GuCGGCGcGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 151994 0.66 0.797824
Target:  5'- cGGgCCG--GGUGGCGGCgGCaGCaGCCc -3'
miRNA:   3'- -CCgGGCagCCACUGUCGgCG-CGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 153597 0.66 0.797824
Target:  5'- cGGCgugaCCGgCGGUG-CGGUCGCGggugGCCg -3'
miRNA:   3'- -CCG----GGCaGCCACuGUCGGCGCga--CGG- -5'
30239 5' -61.7 NC_006273.1 + 31283 0.66 0.797824
Target:  5'- aGCCguUCGGggcguGCGGCCGCGCUaGCg -3'
miRNA:   3'- cCGGgcAGCCac---UGUCGGCGCGA-CGg -5'
30239 5' -61.7 NC_006273.1 + 75488 0.66 0.789415
Target:  5'- aGGaCCCGcCGGcGcuuCGGCCGC-CUGCg -3'
miRNA:   3'- -CC-GGGCaGCCaCu--GUCGGCGcGACGg -5'
30239 5' -61.7 NC_006273.1 + 170102 0.66 0.789415
Target:  5'- aGGUgCGgCGGUGGucGuuGuCGCUGCCg -3'
miRNA:   3'- -CCGgGCaGCCACUguCggC-GCGACGG- -5'
30239 5' -61.7 NC_006273.1 + 80816 0.66 0.789415
Target:  5'- gGGgUUGUUGGUGGCaacgacguGGCCGCGggGCg -3'
miRNA:   3'- -CCgGGCAGCCACUG--------UCGGCGCgaCGg -5'
30239 5' -61.7 NC_006273.1 + 133239 0.66 0.789415
Target:  5'- -aCCUGUaCGGUGGCGaCgGCGCcacUGCCg -3'
miRNA:   3'- ccGGGCA-GCCACUGUcGgCGCG---ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.