miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30239 5' -61.7 NC_006273.1 + 86574 0.65 0.811006
Target:  5'- cGGCCgGUCGcucgcgaaaagccGUGGCAuugagacgcacggcGCCGCcGCcgGCCu -3'
miRNA:   3'- -CCGGgCAGC-------------CACUGU--------------CGGCG-CGa-CGG- -5'
30239 5' -61.7 NC_006273.1 + 125295 0.65 0.811006
Target:  5'- gGGCCCGcguuugcgucuaGGUGACucGCCGCuaacCUGCg -3'
miRNA:   3'- -CCGGGCag----------CCACUGu-CGGCGc---GACGg -5'
30239 5' -61.7 NC_006273.1 + 163070 0.66 0.763486
Target:  5'- aGUCCGaggcggCGGcGACGGCgGCgGCUGCg -3'
miRNA:   3'- cCGGGCa-----GCCaCUGUCGgCG-CGACGg -5'
30239 5' -61.7 NC_006273.1 + 57839 0.66 0.780885
Target:  5'- cGCCCGgCGucuaauaauACAGCCGCGCcgaGCCa -3'
miRNA:   3'- cCGGGCaGCcac------UGUCGGCGCGa--CGG- -5'
30239 5' -61.7 NC_006273.1 + 167327 0.66 0.789415
Target:  5'- cGGCagCGgCGGccACGGCgGCGCUGgCCg -3'
miRNA:   3'- -CCGg-GCaGCCacUGUCGgCGCGAC-GG- -5'
30239 5' -61.7 NC_006273.1 + 111962 0.66 0.772239
Target:  5'- uGCCgCG-CGGUGGCGGUCaagucuggaGCGUagUGCCu -3'
miRNA:   3'- cCGG-GCaGCCACUGUCGG---------CGCG--ACGG- -5'
30239 5' -61.7 NC_006273.1 + 62623 0.66 0.805282
Target:  5'- cGUCUGUUGaGUGAgGaaguuucGCCGCGC-GCCa -3'
miRNA:   3'- cCGGGCAGC-CACUgU-------CGGCGCGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 153360 0.66 0.789415
Target:  5'- cGUCCGagGccGGCGGCaCGCGCgUGCCc -3'
miRNA:   3'- cCGGGCagCcaCUGUCG-GCGCG-ACGG- -5'
30239 5' -61.7 NC_006273.1 + 117039 0.66 0.772239
Target:  5'- cGGCCUGUUGGgcaACAGCguggaCGCGCU-CUa -3'
miRNA:   3'- -CCGGGCAGCCac-UGUCG-----GCGCGAcGG- -5'
30239 5' -61.7 NC_006273.1 + 221817 0.66 0.763486
Target:  5'- cGCCCGgCGG-GugAGCacccgGCGUUGCg -3'
miRNA:   3'- cCGGGCaGCCaCugUCGg----CGCGACGg -5'
30239 5' -61.7 NC_006273.1 + 126994 0.66 0.805282
Target:  5'- uGGagaCCG-CGGUGGCGGCCGgcaucaggagaaaCGCcgGUCg -3'
miRNA:   3'- -CCg--GGCaGCCACUGUCGGC-------------GCGa-CGG- -5'
30239 5' -61.7 NC_006273.1 + 64525 0.66 0.797824
Target:  5'- cGGCUCGacaUCGGUGuccCuGCCGC-CgGCCu -3'
miRNA:   3'- -CCGGGC---AGCCACu--GuCGGCGcGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 31283 0.66 0.797824
Target:  5'- aGCCguUCGGggcguGCGGCCGCGCUaGCg -3'
miRNA:   3'- cCGGgcAGCCac---UGUCGGCGCGA-CGg -5'
30239 5' -61.7 NC_006273.1 + 195123 0.66 0.788567
Target:  5'- gGGUgUGUCGGgguguguUGGCgGGCCGUGuCUGCg -3'
miRNA:   3'- -CCGgGCAGCC-------ACUG-UCGGCGC-GACGg -5'
30239 5' -61.7 NC_006273.1 + 75488 0.66 0.789415
Target:  5'- aGGaCCCGcCGGcGcuuCGGCCGC-CUGCg -3'
miRNA:   3'- -CC-GGGCaGCCaCu--GUCGGCGcGACGg -5'
30239 5' -61.7 NC_006273.1 + 30849 0.66 0.772239
Target:  5'- aGuCCCGU-GGcgccagGugAGCCGUccGCUGCCg -3'
miRNA:   3'- cC-GGGCAgCCa-----CugUCGGCG--CGACGG- -5'
30239 5' -61.7 NC_006273.1 + 151994 0.66 0.797824
Target:  5'- cGGgCCG--GGUGGCGGCgGCaGCaGCCc -3'
miRNA:   3'- -CCgGGCagCCACUGUCGgCG-CGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 64772 0.66 0.763486
Target:  5'- uGCCCGcCGGcgGGCGGCUGC-CgGUCu -3'
miRNA:   3'- cCGGGCaGCCa-CUGUCGGCGcGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 116769 0.66 0.806104
Target:  5'- cGGCCUcUCGcucucCAGCCgGCGCUGCg -3'
miRNA:   3'- -CCGGGcAGCcacu-GUCGG-CGCGACGg -5'
30239 5' -61.7 NC_006273.1 + 141783 0.66 0.780885
Target:  5'- aGGCcgccgcucaagCCG-CGGU-ACAgGCCGCGCagGCCg -3'
miRNA:   3'- -CCG-----------GGCaGCCAcUGU-CGGCGCGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.