miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30239 5' -61.7 NC_006273.1 + 170102 0.66 0.789415
Target:  5'- aGGUgCGgCGGUGGucGuuGuCGCUGCCg -3'
miRNA:   3'- -CCGgGCaGCCACUguCggC-GCGACGG- -5'
30239 5' -61.7 NC_006273.1 + 133239 0.66 0.789415
Target:  5'- -aCCUGUaCGGUGGCGaCgGCGCcacUGCCg -3'
miRNA:   3'- ccGGGCA-GCCACUGUcGgCGCG---ACGG- -5'
30239 5' -61.7 NC_006273.1 + 80816 0.66 0.789415
Target:  5'- gGGgUUGUUGGUGGCaacgacguGGCCGCGggGCg -3'
miRNA:   3'- -CCgGGCAGCCACUG--------UCGGCGCgaCGg -5'
30239 5' -61.7 NC_006273.1 + 195123 0.66 0.788567
Target:  5'- gGGUgUGUCGGgguguguUGGCgGGCCGUGuCUGCg -3'
miRNA:   3'- -CCGgGCAGCC-------ACUG-UCGGCGC-GACGg -5'
30239 5' -61.7 NC_006273.1 + 230 0.66 0.788567
Target:  5'- gGGUgUGUCGGgguguguUGGCgGGCCGUGuCUGCg -3'
miRNA:   3'- -CCGgGCAGCC-------ACUG-UCGGCGC-GACGg -5'
30239 5' -61.7 NC_006273.1 + 235061 0.66 0.788567
Target:  5'- gGGUgUGUCGGgguguguUGGCgGGCCGUGuCUGCg -3'
miRNA:   3'- -CCGgGCAGCC-------ACUG-UCGGCGC-GACGg -5'
30239 5' -61.7 NC_006273.1 + 71920 0.66 0.788567
Target:  5'- aGCCaGcCGGUGAUcguacacggcacaAGCCGCGUugagGCCc -3'
miRNA:   3'- cCGGgCaGCCACUG-------------UCGGCGCGa---CGG- -5'
30239 5' -61.7 NC_006273.1 + 157887 0.66 0.780885
Target:  5'- cGGCUgGUUGGUGGagagcuugagUAGCU-CGCUGCUc -3'
miRNA:   3'- -CCGGgCAGCCACU----------GUCGGcGCGACGG- -5'
30239 5' -61.7 NC_006273.1 + 30663 0.66 0.780885
Target:  5'- cGCgCCGggCGGcuuccugcgGcCGGCCGCGgUGCCg -3'
miRNA:   3'- cCG-GGCa-GCCa--------CuGUCGGCGCgACGG- -5'
30239 5' -61.7 NC_006273.1 + 57839 0.66 0.780885
Target:  5'- cGCCCGgCGucuaauaauACAGCCGCGCcgaGCCa -3'
miRNA:   3'- cCGGGCaGCcac------UGUCGGCGCGa--CGG- -5'
30239 5' -61.7 NC_006273.1 + 141783 0.66 0.780885
Target:  5'- aGGCcgccgcucaagCCG-CGGU-ACAgGCCGCGCagGCCg -3'
miRNA:   3'- -CCG-----------GGCaGCCAcUGU-CGGCGCGa-CGG- -5'
30239 5' -61.7 NC_006273.1 + 150519 0.66 0.77571
Target:  5'- -uCCCGU-GGccaagcccuccacccUGACGGCCGCcGCgGCCg -3'
miRNA:   3'- ccGGGCAgCC---------------ACUGUCGGCG-CGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 30849 0.66 0.772239
Target:  5'- aGuCCCGU-GGcgccagGugAGCCGUccGCUGCCg -3'
miRNA:   3'- cC-GGGCAgCCa-----CugUCGGCG--CGACGG- -5'
30239 5' -61.7 NC_006273.1 + 98947 0.66 0.772239
Target:  5'- cGCCCcgccgaCGGUGAUucguggucguAGCCaacugGUGCUGCCg -3'
miRNA:   3'- cCGGGca----GCCACUG----------UCGG-----CGCGACGG- -5'
30239 5' -61.7 NC_006273.1 + 111962 0.66 0.772239
Target:  5'- uGCCgCG-CGGUGGCGGUCaagucuggaGCGUagUGCCu -3'
miRNA:   3'- cCGG-GCaGCCACUGUCGG---------CGCG--ACGG- -5'
30239 5' -61.7 NC_006273.1 + 117039 0.66 0.772239
Target:  5'- cGGCCUGUUGGgcaACAGCguggaCGCGCU-CUa -3'
miRNA:   3'- -CCGGGCAGCCac-UGUCG-----GCGCGAcGG- -5'
30239 5' -61.7 NC_006273.1 + 179269 0.66 0.771368
Target:  5'- cGGCCCGUUuc-GACgaaauccGGCgGCGCcGCCa -3'
miRNA:   3'- -CCGGGCAGccaCUG-------UCGgCGCGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 101162 0.66 0.763486
Target:  5'- aGGCCuCGggcaCGGgcgUGGCGGCCGUagGC-GCCu -3'
miRNA:   3'- -CCGG-GCa---GCC---ACUGUCGGCG--CGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 64772 0.66 0.763486
Target:  5'- uGCCCGcCGGcgGGCGGCUGC-CgGUCu -3'
miRNA:   3'- cCGGGCaGCCa-CUGUCGGCGcGaCGG- -5'
30239 5' -61.7 NC_006273.1 + 221817 0.66 0.763486
Target:  5'- cGCCCGgCGG-GugAGCacccgGCGUUGCg -3'
miRNA:   3'- cCGGGCaGCCaCugUCGg----CGCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.