miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30240 5' -55.6 NC_006273.1 + 189076 0.66 0.97438
Target:  5'- gCGgCCGcuucuUGCGcCCGGGcGGCGGAGgUGGc -3'
miRNA:   3'- -GCaGGU-----ACGU-GGCUC-CCGUCUUgACC- -5'
30240 5' -55.6 NC_006273.1 + 57473 0.66 0.971758
Target:  5'- uGUCUGUGCGCCGu-GGU---GCUGGg -3'
miRNA:   3'- gCAGGUACGUGGCucCCGucuUGACC- -5'
30240 5' -55.6 NC_006273.1 + 174777 0.66 0.971758
Target:  5'- gCGuUCCAaUGCACCGuucccGGccGCGGAgGCUGGa -3'
miRNA:   3'- -GC-AGGU-ACGUGGCu----CC--CGUCU-UGACC- -5'
30240 5' -55.6 NC_006273.1 + 131270 0.66 0.968948
Target:  5'- gCGUCUucggGCacACCGAGGGcCAGGugcuACUGa -3'
miRNA:   3'- -GCAGGua--CG--UGGCUCCC-GUCU----UGACc -5'
30240 5' -55.6 NC_006273.1 + 182748 0.66 0.968948
Target:  5'- --cCCAUGgaCGCCGAGGGCcucucAGGACUu- -3'
miRNA:   3'- gcaGGUAC--GUGGCUCCCG-----UCUUGAcc -5'
30240 5' -55.6 NC_006273.1 + 193597 0.66 0.962741
Target:  5'- aGUgCC--GCGuuGGgcGGGCAGGGCUGGa -3'
miRNA:   3'- gCA-GGuaCGUggCU--CCCGUCUUGACC- -5'
30240 5' -55.6 NC_006273.1 + 10242 0.66 0.96241
Target:  5'- gGUCCAcGCACCGAGagacugaGGCAGcguccgguUUGGu -3'
miRNA:   3'- gCAGGUaCGUGGCUC-------CCGUCuu------GACC- -5'
30240 5' -55.6 NC_006273.1 + 71603 0.67 0.95572
Target:  5'- gGUCCcgGCGCgGuguuagacauGGGGCAGGcCgUGGg -3'
miRNA:   3'- gCAGGuaCGUGgC----------UCCCGUCUuG-ACC- -5'
30240 5' -55.6 NC_006273.1 + 29261 0.67 0.95572
Target:  5'- uGUCCGUGCccacGCCGAcaccccGGGUguacuaccAGAcGCUGGa -3'
miRNA:   3'- gCAGGUACG----UGGCU------CCCG--------UCU-UGACC- -5'
30240 5' -55.6 NC_006273.1 + 27078 0.67 0.955347
Target:  5'- aGUCCAUGCGCacagauggcaUGAguccuugagugacGGuGguGAGCUGGg -3'
miRNA:   3'- gCAGGUACGUG----------GCU-------------CC-CguCUUGACC- -5'
30240 5' -55.6 NC_006273.1 + 15686 0.67 0.951893
Target:  5'- gCGUUCGUcGaCGCgCGAGGGCgcAGAGCgGGu -3'
miRNA:   3'- -GCAGGUA-C-GUG-GCUCCCG--UCUUGaCC- -5'
30240 5' -55.6 NC_006273.1 + 94509 0.67 0.951893
Target:  5'- cCGUCCGcgGC-CCGGGGGgAcccGAGCgGGg -3'
miRNA:   3'- -GCAGGUa-CGuGGCUCCCgU---CUUGaCC- -5'
30240 5' -55.6 NC_006273.1 + 214943 0.67 0.951893
Target:  5'- uGUCCAaccgugGCACCGuaGGCGGAACa-- -3'
miRNA:   3'- gCAGGUa-----CGUGGCucCCGUCUUGacc -5'
30240 5' -55.6 NC_006273.1 + 64685 0.67 0.951499
Target:  5'- cCGUCC-UGCagACCGAGGcGCuGGACgccaucaUGGa -3'
miRNA:   3'- -GCAGGuACG--UGGCUCC-CGuCUUG-------ACC- -5'
30240 5' -55.6 NC_006273.1 + 46873 0.67 0.947851
Target:  5'- gGUCCGgcUGCACCGGGuacGC-GAcgcGCUGGg -3'
miRNA:   3'- gCAGGU--ACGUGGCUCc--CGuCU---UGACC- -5'
30240 5' -55.6 NC_006273.1 + 234608 0.67 0.94359
Target:  5'- uCGUCCGUGUGCCac-GGCAGAcacgcacCUGGc -3'
miRNA:   3'- -GCAGGUACGUGGcucCCGUCUu------GACC- -5'
30240 5' -55.6 NC_006273.1 + 33221 0.67 0.94359
Target:  5'- gGcCCGguagcGCACCGAGGGCcccGGGGC-GGc -3'
miRNA:   3'- gCaGGUa----CGUGGCUCCCG---UCUUGaCC- -5'
30240 5' -55.6 NC_006273.1 + 39716 0.67 0.94359
Target:  5'- uCGUCCGUGUGCCac-GGCAGAcacgcacCUGGc -3'
miRNA:   3'- -GCAGGUACGUGGcucCCGUCUu------GACC- -5'
30240 5' -55.6 NC_006273.1 + 72348 0.67 0.94359
Target:  5'- cCGUCUcgcccGCGCUGuGGGCGcuGCUGGg -3'
miRNA:   3'- -GCAGGua---CGUGGCuCCCGUcuUGACC- -5'
30240 5' -55.6 NC_006273.1 + 80077 0.67 0.934403
Target:  5'- uCGUCCA-GCAgCGAGGuGUAGAuacggaucuGCUGu -3'
miRNA:   3'- -GCAGGUaCGUgGCUCC-CGUCU---------UGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.