Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30240 | 5' | -55.6 | NC_006273.1 | + | 225175 | 1.1 | 0.004572 |
Target: 5'- gCGUCCAUGCACCGAGGGCAGAACUGGu -3' miRNA: 3'- -GCAGGUACGUGGCUCCCGUCUUGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 125974 | 0.73 | 0.673515 |
Target: 5'- uGUCCGUGCACCGuGGcGGCGGcAUUGc -3' miRNA: 3'- gCAGGUACGUGGC-UC-CCGUCuUGACc -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 207533 | 0.72 | 0.750606 |
Target: 5'- uCGUCCAgggcagGCGCCaGAGGuuGGGACUGa -3' miRNA: 3'- -GCAGGUa-----CGUGG-CUCCcgUCUUGACc -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 104312 | 0.72 | 0.767242 |
Target: 5'- uCGUCCAgacuggcgaugaGCGCCGAGaGGgGGAuggGCUGGc -3' miRNA: 3'- -GCAGGUa-----------CGUGGCUC-CCgUCU---UGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 217511 | 0.71 | 0.82145 |
Target: 5'- uGUCCAc-UACCGAGGGUA--ACUGGa -3' miRNA: 3'- gCAGGUacGUGGCUCCCGUcuUGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 8391 | 0.7 | 0.829659 |
Target: 5'- aGUUCuaaGCGCCGAGGGUAGGugcguuUUGGc -3' miRNA: 3'- gCAGGua-CGUGGCUCCCGUCUu-----GACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 167386 | 0.69 | 0.888736 |
Target: 5'- --cCCAUGaCGCCGccGGGCAGAGCg-- -3' miRNA: 3'- gcaGGUAC-GUGGCu-CCCGUCUUGacc -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 168241 | 0.69 | 0.895214 |
Target: 5'- aCGUUCAUGCGagUCGGGuGGCAGuuGCUGc -3' miRNA: 3'- -GCAGGUACGU--GGCUC-CCGUCu-UGACc -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 96146 | 0.68 | 0.915611 |
Target: 5'- uCGcCCGUGCuCCGAGGaGCAGcGcgccuccuaccagaaGCUGGa -3' miRNA: 3'- -GCaGGUACGuGGCUCC-CGUC-U---------------UGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 29202 | 0.68 | 0.924322 |
Target: 5'- gCGcUgCGUGCuCCGAucGGGCGGucGACUGGa -3' miRNA: 3'- -GC-AgGUACGuGGCU--CCCGUC--UUGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 164471 | 0.68 | 0.924322 |
Target: 5'- gCGUCCAgGCAacCCGAGGcCGGAcGCUGa -3' miRNA: 3'- -GCAGGUaCGU--GGCUCCcGUCU-UGACc -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 174518 | 0.68 | 0.924322 |
Target: 5'- -cUCUGUGUACCGGGGucauacaaaaGCuGGGCUGGu -3' miRNA: 3'- gcAGGUACGUGGCUCC----------CGuCUUGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 140175 | 0.68 | 0.924322 |
Target: 5'- gGUCCGagGCGCCGAccccggcuGGGCGGccgaUGGg -3' miRNA: 3'- gCAGGUa-CGUGGCU--------CCCGUCuug-ACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 196798 | 0.68 | 0.929475 |
Target: 5'- gCGUCUGUGCugCGGcuGGCuGGcGCUGGg -3' miRNA: 3'- -GCAGGUACGugGCUc-CCG-UCuUGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 87472 | 0.68 | 0.929475 |
Target: 5'- gCGUCCGUaGUcacgGCCGAGGccagcGCAGcguAGCUGGc -3' miRNA: 3'- -GCAGGUA-CG----UGGCUCC-----CGUC---UUGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 1906 | 0.68 | 0.929475 |
Target: 5'- gCGUCUGUGCugCGGcuGGCuGGcGCUGGg -3' miRNA: 3'- -GCAGGUACGugGCUc-CCG-UCuUGACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 80077 | 0.67 | 0.934403 |
Target: 5'- uCGUCCA-GCAgCGAGGuGUAGAuacggaucuGCUGu -3' miRNA: 3'- -GCAGGUaCGUgGCUCC-CGUCU---------UGACc -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 33221 | 0.67 | 0.94359 |
Target: 5'- gGcCCGguagcGCACCGAGGGCcccGGGGC-GGc -3' miRNA: 3'- gCaGGUa----CGUGGCUCCCG---UCUUGaCC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 39716 | 0.67 | 0.94359 |
Target: 5'- uCGUCCGUGUGCCac-GGCAGAcacgcacCUGGc -3' miRNA: 3'- -GCAGGUACGUGGcucCCGUCUu------GACC- -5' |
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30240 | 5' | -55.6 | NC_006273.1 | + | 234608 | 0.67 | 0.94359 |
Target: 5'- uCGUCCGUGUGCCac-GGCAGAcacgcacCUGGc -3' miRNA: 3'- -GCAGGUACGUGGcucCCGUCUu------GACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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