miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30241 3' -49.2 NC_006273.1 + 99514 0.66 0.999702
Target:  5'- gGUggCGGCGGcGGCUGCuGCUGUUggguUGCc -3'
miRNA:   3'- -CAaaGCCGUUcUUGACG-UGACAG----ACG- -5'
30241 3' -49.2 NC_006273.1 + 182840 0.66 0.999702
Target:  5'- ---gCGGCGAcGAGCUcgGCUG-CUGCa -3'
miRNA:   3'- caaaGCCGUU-CUUGAcgUGACaGACG- -5'
30241 3' -49.2 NC_006273.1 + 74871 0.66 0.999702
Target:  5'- ---aUGGCAAGAagaaaaacuauACUGaauaaACUGUgUGCa -3'
miRNA:   3'- caaaGCCGUUCU-----------UGACg----UGACAgACG- -5'
30241 3' -49.2 NC_006273.1 + 39246 0.66 0.999625
Target:  5'- ---aUGGCGcGAcGCUGCugUGUC-GCg -3'
miRNA:   3'- caaaGCCGUuCU-UGACGugACAGaCG- -5'
30241 3' -49.2 NC_006273.1 + 196486 0.66 0.999625
Target:  5'- gGUUUCGGCAcggcgcGGGcgagguggugcgGCUGUACcG-CUGCa -3'
miRNA:   3'- -CAAAGCCGU------UCU------------UGACGUGaCaGACG- -5'
30241 3' -49.2 NC_006273.1 + 1593 0.66 0.999625
Target:  5'- gGUUUCGGCAcggcgcGGGcgagguggugcgGCUGUACcG-CUGCa -3'
miRNA:   3'- -CAAAGCCGU------UCU------------UGACGUGaCaGACG- -5'
30241 3' -49.2 NC_006273.1 + 204353 0.66 0.999532
Target:  5'- cGUUgaggCGGCGgaGGuGCUGCACgucaaaGUCUuGCa -3'
miRNA:   3'- -CAAa---GCCGU--UCuUGACGUGa-----CAGA-CG- -5'
30241 3' -49.2 NC_006273.1 + 162557 0.66 0.999532
Target:  5'- cGUUUCGaacGCuacGAcaccgacuaccuGCUGCGCcGUCUGCg -3'
miRNA:   3'- -CAAAGC---CGuu-CU------------UGACGUGaCAGACG- -5'
30241 3' -49.2 NC_006273.1 + 198411 0.67 0.999267
Target:  5'- uUUUCGGCGAauuccGAGCUcugcaucucauugGCACgGUCUcGCa -3'
miRNA:   3'- cAAAGCCGUU-----CUUGA-------------CGUGaCAGA-CG- -5'
30241 3' -49.2 NC_006273.1 + 40907 0.67 0.99912
Target:  5'- ---cCGGCGucGAC-GCACcGUCUGCg -3'
miRNA:   3'- caaaGCCGUucUUGaCGUGaCAGACG- -5'
30241 3' -49.2 NC_006273.1 + 161897 0.67 0.99912
Target:  5'- ---aUGGCAAGGuGCUGCaccucaacaaggGCUGgcUCUGCg -3'
miRNA:   3'- caaaGCCGUUCU-UGACG------------UGAC--AGACG- -5'
30241 3' -49.2 NC_006273.1 + 1727 0.67 0.998926
Target:  5'- --cUCGGaCGGGAGCUGCGCcggcgGUggGCc -3'
miRNA:   3'- caaAGCC-GUUCUUGACGUGa----CAgaCG- -5'
30241 3' -49.2 NC_006273.1 + 196619 0.67 0.998926
Target:  5'- --cUCGGaCGGGAGCUGCGCcggcgGUggGCc -3'
miRNA:   3'- caaAGCC-GUUCUUGACGUGa----CAgaCG- -5'
30241 3' -49.2 NC_006273.1 + 181527 0.67 0.998926
Target:  5'- ----aGGCAuGAGCUGCagggccacgGCUGUCacgGCa -3'
miRNA:   3'- caaagCCGUuCUUGACG---------UGACAGa--CG- -5'
30241 3' -49.2 NC_006273.1 + 84133 0.67 0.998926
Target:  5'- ---gCGGCuguAGGAACUguaGCACUGaCUGUg -3'
miRNA:   3'- caaaGCCG---UUCUUGA---CGUGACaGACG- -5'
30241 3' -49.2 NC_006273.1 + 201918 0.67 0.998698
Target:  5'- --aUCaaGCGcGAGCUGCugUGcCUGCa -3'
miRNA:   3'- caaAGc-CGUuCUUGACGugACaGACG- -5'
30241 3' -49.2 NC_006273.1 + 196782 0.67 0.998429
Target:  5'- --gUCGGCAccuGAACcaGCGuCUGUgCUGCg -3'
miRNA:   3'- caaAGCCGUu--CUUGa-CGU-GACA-GACG- -5'
30241 3' -49.2 NC_006273.1 + 142846 0.67 0.998429
Target:  5'- ---aCGGCcacGGGCUGC--UGUCUGCu -3'
miRNA:   3'- caaaGCCGuu-CUUGACGugACAGACG- -5'
30241 3' -49.2 NC_006273.1 + 1890 0.67 0.998429
Target:  5'- --gUCGGCAccuGAACcaGCGuCUGUgCUGCg -3'
miRNA:   3'- caaAGCCGUu--CUUGa-CGU-GACA-GACG- -5'
30241 3' -49.2 NC_006273.1 + 16133 0.67 0.998429
Target:  5'- ---cCGGCAgcaccaugccGGAGCUGCGCgaccaaCUGCu -3'
miRNA:   3'- caaaGCCGU----------UCUUGACGUGaca---GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.