miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30241 3' -49.2 NC_006273.1 + 1593 0.66 0.999625
Target:  5'- gGUUUCGGCAcggcgcGGGcgagguggugcgGCUGUACcG-CUGCa -3'
miRNA:   3'- -CAAAGCCGU------UCU------------UGACGUGaCaGACG- -5'
30241 3' -49.2 NC_006273.1 + 1727 0.67 0.998926
Target:  5'- --cUCGGaCGGGAGCUGCGCcggcgGUggGCc -3'
miRNA:   3'- caaAGCC-GUUCUUGACGUGa----CAgaCG- -5'
30241 3' -49.2 NC_006273.1 + 1890 0.67 0.998429
Target:  5'- --gUCGGCAccuGAACcaGCGuCUGUgCUGCg -3'
miRNA:   3'- caaAGCCGUu--CUUGa-CGU-GACA-GACG- -5'
30241 3' -49.2 NC_006273.1 + 2053 0.69 0.993192
Target:  5'- ---aUGGCAGGAGCcGUGggGUCUGCu -3'
miRNA:   3'- caaaGCCGUUCUUGaCGUgaCAGACG- -5'
30241 3' -49.2 NC_006273.1 + 2341 0.69 0.993192
Target:  5'- ---gCGGC-GGAGCUgucGCACUuUCUGCg -3'
miRNA:   3'- caaaGCCGuUCUUGA---CGUGAcAGACG- -5'
30241 3' -49.2 NC_006273.1 + 16133 0.67 0.998429
Target:  5'- ---cCGGCAgcaccaugccGGAGCUGCGCgaccaaCUGCu -3'
miRNA:   3'- caaaGCCGU----------UCUUGACGUGaca---GACG- -5'
30241 3' -49.2 NC_006273.1 + 18827 0.7 0.986754
Target:  5'- --gUCGGUuggAGGAGCUGC-CcGUCUGUc -3'
miRNA:   3'- caaAGCCG---UUCUUGACGuGaCAGACG- -5'
30241 3' -49.2 NC_006273.1 + 39246 0.66 0.999625
Target:  5'- ---aUGGCGcGAcGCUGCugUGUC-GCg -3'
miRNA:   3'- caaaGCCGUuCU-UGACGugACAGaCG- -5'
30241 3' -49.2 NC_006273.1 + 40907 0.67 0.99912
Target:  5'- ---cCGGCGucGAC-GCACcGUCUGCg -3'
miRNA:   3'- caaaGCCGUucUUGaCGUGaCAGACG- -5'
30241 3' -49.2 NC_006273.1 + 70113 0.69 0.992162
Target:  5'- cUUUCcaCAAGAcauGCUGCAgUGUCUGUg -3'
miRNA:   3'- cAAAGccGUUCU---UGACGUgACAGACG- -5'
30241 3' -49.2 NC_006273.1 + 74871 0.66 0.999702
Target:  5'- ---aUGGCAAGAagaaaaacuauACUGaauaaACUGUgUGCa -3'
miRNA:   3'- caaaGCCGUUCU-----------UGACg----UGACAgACG- -5'
30241 3' -49.2 NC_006273.1 + 82390 0.69 0.99411
Target:  5'- uGUcgCGGCcAGAGCaUGCACcagGUgCUGCg -3'
miRNA:   3'- -CAaaGCCGuUCUUG-ACGUGa--CA-GACG- -5'
30241 3' -49.2 NC_006273.1 + 84133 0.67 0.998926
Target:  5'- ---gCGGCuguAGGAACUguaGCACUGaCUGUg -3'
miRNA:   3'- caaaGCCG---UUCUUGA---CGUGACaGACG- -5'
30241 3' -49.2 NC_006273.1 + 87701 0.7 0.986754
Target:  5'- ---gCGGCcacGGGGGCUGCgACUGUugCUGCu -3'
miRNA:   3'- caaaGCCG---UUCUUGACG-UGACA--GACG- -5'
30241 3' -49.2 NC_006273.1 + 99514 0.66 0.999702
Target:  5'- gGUggCGGCGGcGGCUGCuGCUGUUggguUGCc -3'
miRNA:   3'- -CAaaGCCGUUcUUGACG-UGACAG----ACG- -5'
30241 3' -49.2 NC_006273.1 + 114082 0.7 0.991487
Target:  5'- -gUUCGGCGAGAGCgggcgGCGgUGguggguauguccccuUCUGUg -3'
miRNA:   3'- caAAGCCGUUCUUGa----CGUgAC---------------AGACG- -5'
30241 3' -49.2 NC_006273.1 + 115395 0.69 0.995648
Target:  5'- ---aCGGCAuuauGAGCggcgGCGCUGUacgGCa -3'
miRNA:   3'- caaaGCCGUu---CUUGa---CGUGACAga-CG- -5'
30241 3' -49.2 NC_006273.1 + 126386 0.77 0.831365
Target:  5'- ---cCGGguGGAugUGCGCcuugGUCUGCa -3'
miRNA:   3'- caaaGCCguUCUugACGUGa---CAGACG- -5'
30241 3' -49.2 NC_006273.1 + 130805 0.75 0.886396
Target:  5'- gGUUUCGGCGAacGGACacGCGCUGUCUuccaccGCg -3'
miRNA:   3'- -CAAAGCCGUU--CUUGa-CGUGACAGA------CG- -5'
30241 3' -49.2 NC_006273.1 + 142816 0.69 0.994926
Target:  5'- --gUgGGCAcGGGCgUGCACcgcgGUCUGCu -3'
miRNA:   3'- caaAgCCGUuCUUG-ACGUGa---CAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.