Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30241 | 3' | -49.2 | NC_006273.1 | + | 142846 | 0.67 | 0.998429 |
Target: 5'- ---aCGGCcacGGGCUGC--UGUCUGCu -3' miRNA: 3'- caaaGCCGuu-CUUGACGugACAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 143444 | 0.7 | 0.989734 |
Target: 5'- ---aCGGCAAGcucacgcACUGCuccgacgcCUGUCUGCu -3' miRNA: 3'- caaaGCCGUUCu------UGACGu-------GACAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 155657 | 0.72 | 0.970951 |
Target: 5'- ----gGGCAAGAGuCUGCAC-GUgUGCa -3' miRNA: 3'- caaagCCGUUCUU-GACGUGaCAgACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 161897 | 0.67 | 0.99912 |
Target: 5'- ---aUGGCAAGGuGCUGCaccucaacaaggGCUGgcUCUGCg -3' miRNA: 3'- caaaGCCGUUCU-UGACG------------UGAC--AGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 162557 | 0.66 | 0.999532 |
Target: 5'- cGUUUCGaacGCuacGAcaccgacuaccuGCUGCGCcGUCUGCg -3' miRNA: 3'- -CAAAGC---CGuu-CU------------UGACGUGaCAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 164898 | 0.68 | 0.996284 |
Target: 5'- ---cCGGCAGGuuGAC-GCGC-GUCUGCu -3' miRNA: 3'- caaaGCCGUUC--UUGaCGUGaCAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 174075 | 0.68 | 0.996841 |
Target: 5'- --cUCGGCcAGcAC-GCGCUGcCUGCu -3' miRNA: 3'- caaAGCCGuUCuUGaCGUGACaGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 181527 | 0.67 | 0.998926 |
Target: 5'- ----aGGCAuGAGCUGCagggccacgGCUGUCacgGCa -3' miRNA: 3'- caaagCCGUuCUUGACG---------UGACAGa--CG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 182840 | 0.66 | 0.999702 |
Target: 5'- ---gCGGCGAcGAGCUcgGCUG-CUGCa -3' miRNA: 3'- caaaGCCGUU-CUUGAcgUGACaGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 185504 | 0.69 | 0.994926 |
Target: 5'- --gUgGGCAAGAuggGCACcGUCUGUu -3' miRNA: 3'- caaAgCCGUUCUugaCGUGaCAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 188084 | 0.68 | 0.998081 |
Target: 5'- --aUCGGCuGGAaggccggACUGCugUGUUgccGCg -3' miRNA: 3'- caaAGCCGuUCU-------UGACGugACAGa--CG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 196486 | 0.66 | 0.999625 |
Target: 5'- gGUUUCGGCAcggcgcGGGcgagguggugcgGCUGUACcG-CUGCa -3' miRNA: 3'- -CAAAGCCGU------UCU------------UGACGUGaCaGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 196619 | 0.67 | 0.998926 |
Target: 5'- --cUCGGaCGGGAGCUGCGCcggcgGUggGCc -3' miRNA: 3'- caaAGCC-GUUCUUGACGUGa----CAgaCG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 196782 | 0.67 | 0.998429 |
Target: 5'- --gUCGGCAccuGAACcaGCGuCUGUgCUGCg -3' miRNA: 3'- caaAGCCGUu--CUUGa-CGU-GACA-GACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 196946 | 0.69 | 0.993192 |
Target: 5'- ---aUGGCAGGAGCcGUGggGUCUGCu -3' miRNA: 3'- caaaGCCGUUCUUGaCGUgaCAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 197234 | 0.69 | 0.993192 |
Target: 5'- ---gCGGC-GGAGCUgucGCACUuUCUGCg -3' miRNA: 3'- caaaGCCGuUCUUGA---CGUGAcAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 198411 | 0.67 | 0.999267 |
Target: 5'- uUUUCGGCGAauuccGAGCUcugcaucucauugGCACgGUCUcGCa -3' miRNA: 3'- cAAAGCCGUU-----CUUGA-------------CGUGaCAGA-CG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 201721 | 0.8 | 0.675616 |
Target: 5'- uGUUUaaaGGCGAG-GCUGCGCUG-CUGCg -3' miRNA: 3'- -CAAAg--CCGUUCuUGACGUGACaGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 201918 | 0.67 | 0.998698 |
Target: 5'- --aUCaaGCGcGAGCUGCugUGcCUGCa -3' miRNA: 3'- caaAGc-CGUuCUUGACGugACaGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 204353 | 0.66 | 0.999532 |
Target: 5'- cGUUgaggCGGCGgaGGuGCUGCACgucaaaGUCUuGCa -3' miRNA: 3'- -CAAa---GCCGU--UCuUGACGUGa-----CAGA-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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