miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30241 3' -49.2 NC_006273.1 + 161897 0.67 0.99912
Target:  5'- ---aUGGCAAGGuGCUGCaccucaacaaggGCUGgcUCUGCg -3'
miRNA:   3'- caaaGCCGUUCU-UGACG------------UGAC--AGACG- -5'
30241 3' -49.2 NC_006273.1 + 115395 0.69 0.995648
Target:  5'- ---aCGGCAuuauGAGCggcgGCGCUGUacgGCa -3'
miRNA:   3'- caaaGCCGUu---CUUGa---CGUGACAga-CG- -5'
30241 3' -49.2 NC_006273.1 + 164898 0.68 0.996284
Target:  5'- ---cCGGCAGGuuGAC-GCGC-GUCUGCu -3'
miRNA:   3'- caaaGCCGUUC--UUGaCGUGaCAGACG- -5'
30241 3' -49.2 NC_006273.1 + 142846 0.67 0.998429
Target:  5'- ---aCGGCcacGGGCUGC--UGUCUGCu -3'
miRNA:   3'- caaaGCCGuu-CUUGACGugACAGACG- -5'
30241 3' -49.2 NC_006273.1 + 196782 0.67 0.998429
Target:  5'- --gUCGGCAccuGAACcaGCGuCUGUgCUGCg -3'
miRNA:   3'- caaAGCCGUu--CUUGa-CGU-GACA-GACG- -5'
30241 3' -49.2 NC_006273.1 + 84133 0.67 0.998926
Target:  5'- ---gCGGCuguAGGAACUguaGCACUGaCUGUg -3'
miRNA:   3'- caaaGCCG---UUCUUGA---CGUGACaGACG- -5'
30241 3' -49.2 NC_006273.1 + 181527 0.67 0.998926
Target:  5'- ----aGGCAuGAGCUGCagggccacgGCUGUCacgGCa -3'
miRNA:   3'- caaagCCGUuCUUGACG---------UGACAGa--CG- -5'
30241 3' -49.2 NC_006273.1 + 196619 0.67 0.998926
Target:  5'- --cUCGGaCGGGAGCUGCGCcggcgGUggGCc -3'
miRNA:   3'- caaAGCC-GUUCUUGACGUGa----CAgaCG- -5'
30241 3' -49.2 NC_006273.1 + 40907 0.67 0.99912
Target:  5'- ---cCGGCGucGAC-GCACcGUCUGCg -3'
miRNA:   3'- caaaGCCGUucUUGaCGUGaCAGACG- -5'
30241 3' -49.2 NC_006273.1 + 142816 0.69 0.994926
Target:  5'- --gUgGGCAcGGGCgUGCACcgcgGUCUGCu -3'
miRNA:   3'- caaAgCCGUuCUUG-ACGUGa---CAGACG- -5'
30241 3' -49.2 NC_006273.1 + 227005 0.69 0.99411
Target:  5'- --cUCGGCGcuuAGAACUGCACgauggCcGCa -3'
miRNA:   3'- caaAGCCGU---UCUUGACGUGaca--GaCG- -5'
30241 3' -49.2 NC_006273.1 + 196946 0.69 0.993192
Target:  5'- ---aUGGCAGGAGCcGUGggGUCUGCu -3'
miRNA:   3'- caaaGCCGUUCUUGaCGUgaCAGACG- -5'
30241 3' -49.2 NC_006273.1 + 126386 0.77 0.831365
Target:  5'- ---cCGGguGGAugUGCGCcuugGUCUGCa -3'
miRNA:   3'- caaaGCCguUCUugACGUGa---CAGACG- -5'
30241 3' -49.2 NC_006273.1 + 130805 0.75 0.886396
Target:  5'- gGUUUCGGCGAacGGACacGCGCUGUCUuccaccGCg -3'
miRNA:   3'- -CAAAGCCGUU--CUUGa-CGUGACAGA------CG- -5'
30241 3' -49.2 NC_006273.1 + 155657 0.72 0.970951
Target:  5'- ----gGGCAAGAGuCUGCAC-GUgUGCa -3'
miRNA:   3'- caaagCCGUUCUU-GACGUGaCAgACG- -5'
30241 3' -49.2 NC_006273.1 + 87701 0.7 0.986754
Target:  5'- ---gCGGCcacGGGGGCUGCgACUGUugCUGCu -3'
miRNA:   3'- caaaGCCG---UUCUUGACG-UGACA--GACG- -5'
30241 3' -49.2 NC_006273.1 + 143444 0.7 0.989734
Target:  5'- ---aCGGCAAGcucacgcACUGCuccgacgcCUGUCUGCu -3'
miRNA:   3'- caaaGCCGUUCu------UGACGu-------GACAGACG- -5'
30241 3' -49.2 NC_006273.1 + 114082 0.7 0.991487
Target:  5'- -gUUCGGCGAGAGCgggcgGCGgUGguggguauguccccuUCUGUg -3'
miRNA:   3'- caAAGCCGUUCUUGa----CGUgAC---------------AGACG- -5'
30241 3' -49.2 NC_006273.1 + 70113 0.69 0.992162
Target:  5'- cUUUCcaCAAGAcauGCUGCAgUGUCUGUg -3'
miRNA:   3'- cAAAGccGUUCU---UGACGUgACAGACG- -5'
30241 3' -49.2 NC_006273.1 + 197234 0.69 0.993192
Target:  5'- ---gCGGC-GGAGCUgucGCACUuUCUGCg -3'
miRNA:   3'- caaaGCCGuUCUUGA---CGUGAcAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.