Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30241 | 3' | -49.2 | NC_006273.1 | + | 143444 | 0.7 | 0.989734 |
Target: 5'- ---aCGGCAAGcucacgcACUGCuccgacgcCUGUCUGCu -3' miRNA: 3'- caaaGCCGUUCu------UGACGu-------GACAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 99514 | 0.66 | 0.999702 |
Target: 5'- gGUggCGGCGGcGGCUGCuGCUGUUggguUGCc -3' miRNA: 3'- -CAaaGCCGUUcUUGACG-UGACAG----ACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 196486 | 0.66 | 0.999625 |
Target: 5'- gGUUUCGGCAcggcgcGGGcgagguggugcgGCUGUACcG-CUGCa -3' miRNA: 3'- -CAAAGCCGU------UCU------------UGACGUGaCaGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 39246 | 0.66 | 0.999625 |
Target: 5'- ---aUGGCGcGAcGCUGCugUGUC-GCg -3' miRNA: 3'- caaaGCCGUuCU-UGACGugACAGaCG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 155657 | 0.72 | 0.970951 |
Target: 5'- ----gGGCAAGAGuCUGCAC-GUgUGCa -3' miRNA: 3'- caaagCCGUUCUU-GACGUGaCAgACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 87701 | 0.7 | 0.986754 |
Target: 5'- ---gCGGCcacGGGGGCUGCgACUGUugCUGCu -3' miRNA: 3'- caaaGCCG---UUCUUGACG-UGACA--GACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 114082 | 0.7 | 0.991487 |
Target: 5'- -gUUCGGCGAGAGCgggcgGCGgUGguggguauguccccuUCUGUg -3' miRNA: 3'- caAAGCCGUUCUUGa----CGUgAC---------------AGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 70113 | 0.69 | 0.992162 |
Target: 5'- cUUUCcaCAAGAcauGCUGCAgUGUCUGUg -3' miRNA: 3'- cAAAGccGUUCU---UGACGUgACAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 197234 | 0.69 | 0.993192 |
Target: 5'- ---gCGGC-GGAGCUgucGCACUuUCUGCg -3' miRNA: 3'- caaaGCCGuUCUUGA---CGUGAcAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 196946 | 0.69 | 0.993192 |
Target: 5'- ---aUGGCAGGAGCcGUGggGUCUGCu -3' miRNA: 3'- caaaGCCGUUCUUGaCGUgaCAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 227005 | 0.69 | 0.99411 |
Target: 5'- --cUCGGCGcuuAGAACUGCACgauggCcGCa -3' miRNA: 3'- caaAGCCGU---UCUUGACGUGaca--GaCG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 142816 | 0.69 | 0.994926 |
Target: 5'- --gUgGGCAcGGGCgUGCACcgcgGUCUGCu -3' miRNA: 3'- caaAgCCGUuCUUG-ACGUGa---CAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 115395 | 0.69 | 0.995648 |
Target: 5'- ---aCGGCAuuauGAGCggcgGCGCUGUacgGCa -3' miRNA: 3'- caaaGCCGUu---CUUGa---CGUGACAga-CG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 164898 | 0.68 | 0.996284 |
Target: 5'- ---cCGGCAGGuuGAC-GCGC-GUCUGCu -3' miRNA: 3'- caaaGCCGUUC--UUGaCGUGaCAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 142846 | 0.67 | 0.998429 |
Target: 5'- ---aCGGCcacGGGCUGC--UGUCUGCu -3' miRNA: 3'- caaaGCCGuu-CUUGACGugACAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 84133 | 0.67 | 0.998926 |
Target: 5'- ---gCGGCuguAGGAACUguaGCACUGaCUGUg -3' miRNA: 3'- caaaGCCG---UUCUUGA---CGUGACaGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 181527 | 0.67 | 0.998926 |
Target: 5'- ----aGGCAuGAGCUGCagggccacgGCUGUCacgGCa -3' miRNA: 3'- caaagCCGUuCUUGACG---------UGACAGa--CG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 196619 | 0.67 | 0.998926 |
Target: 5'- --cUCGGaCGGGAGCUGCGCcggcgGUggGCc -3' miRNA: 3'- caaAGCC-GUUCUUGACGUGa----CAgaCG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 40907 | 0.67 | 0.99912 |
Target: 5'- ---cCGGCGucGAC-GCACcGUCUGCg -3' miRNA: 3'- caaaGCCGUucUUGaCGUGaCAGACG- -5' |
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30241 | 3' | -49.2 | NC_006273.1 | + | 161897 | 0.67 | 0.99912 |
Target: 5'- ---aUGGCAAGGuGCUGCaccucaacaaggGCUGgcUCUGCg -3' miRNA: 3'- caaaGCCGUUCU-UGACG------------UGAC--AGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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