miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30241 5' -54.1 NC_006273.1 + 58513 0.66 0.98587
Target:  5'- aCuaCAGCGugUCUUUUCaggUGCGAUu -3'
miRNA:   3'- aGcgGUCGCugAGAAAAGg--GCGCUAc -5'
30241 5' -54.1 NC_006273.1 + 98124 0.66 0.98587
Target:  5'- -gGCgGGCGgaccGCUCUcgUUCCGCGGUc -3'
miRNA:   3'- agCGgUCGC----UGAGAaaAGGGCGCUAc -5'
30241 5' -54.1 NC_006273.1 + 40730 0.66 0.98587
Target:  5'- cUGCCGuugcGUGGCg----UCCCGCGGUGu -3'
miRNA:   3'- aGCGGU----CGCUGagaaaAGGGCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 57916 0.66 0.98587
Target:  5'- -aGCguGCGGCUCUUUgccaacuagCCUGCGu-- -3'
miRNA:   3'- agCGguCGCUGAGAAAa--------GGGCGCuac -5'
30241 5' -54.1 NC_006273.1 + 115134 0.66 0.98587
Target:  5'- cCGCCAGCGGaagCUUUggucgCCUGCa--- -3'
miRNA:   3'- aGCGGUCGCUga-GAAAa----GGGCGcuac -5'
30241 5' -54.1 NC_006273.1 + 179137 0.66 0.98587
Target:  5'- cCGUcccuCAGCGACg----UCCCGCGcgGa -3'
miRNA:   3'- aGCG----GUCGCUGagaaaAGGGCGCuaC- -5'
30241 5' -54.1 NC_006273.1 + 133288 0.66 0.98587
Target:  5'- cUUG-CAGCGGCUCgucgucaCCCGCGuGUGg -3'
miRNA:   3'- -AGCgGUCGCUGAGaaaa---GGGCGC-UAC- -5'
30241 5' -54.1 NC_006273.1 + 792 0.66 0.98587
Target:  5'- cUGCCGuugcGUGGCg----UCCCGCGGUGu -3'
miRNA:   3'- aGCGGU----CGCUGagaaaAGGGCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 46169 0.66 0.984147
Target:  5'- aCGCUAGCGAC-Cgc--CCUGCGGc- -3'
miRNA:   3'- aGCGGUCGCUGaGaaaaGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 63567 0.66 0.984147
Target:  5'- aUCGCCA-CGACUCUcgagcaCCUcaGCGGUGu -3'
miRNA:   3'- -AGCGGUcGCUGAGAaaa---GGG--CGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 201154 0.66 0.98227
Target:  5'- cUGCCGGCGGCcCUgug-CCGCGGg- -3'
miRNA:   3'- aGCGGUCGCUGaGAaaagGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 216524 0.66 0.98023
Target:  5'- gUGCCAGCGcagcacguCUCUUUUCagcgUGUGGUGa -3'
miRNA:   3'- aGCGGUCGCu-------GAGAAAAGg---GCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 201329 0.66 0.98023
Target:  5'- gCGgCGGCGACcacuccUCUUUgucgcccUCCGCGGUGg -3'
miRNA:   3'- aGCgGUCGCUG------AGAAAa------GGGCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 194143 0.66 0.98023
Target:  5'- -gGCCGuCGACUCcacgCgCCGCGGUGa -3'
miRNA:   3'- agCGGUcGCUGAGaaaaG-GGCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 117594 0.66 0.979585
Target:  5'- uUCGCCAGC-ACcgcugccuuugccgUCUUaUCCCGCGu-- -3'
miRNA:   3'- -AGCGGUCGcUG--------------AGAAaAGGGCGCuac -5'
30241 5' -54.1 NC_006273.1 + 144399 0.66 0.97802
Target:  5'- uUCGUCAGCGGCugUCUgcccggCgCCGCGGc- -3'
miRNA:   3'- -AGCGGUCGCUG--AGAaaa---G-GGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 158718 0.66 0.97802
Target:  5'- gUCGgCGGCGAUgaugUUcCCCGCGAa- -3'
miRNA:   3'- -AGCgGUCGCUGaga-AAaGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 158123 0.66 0.97802
Target:  5'- -aG-CAGaugGACUCUUUgCCCGUGAUGg -3'
miRNA:   3'- agCgGUCg--CUGAGAAAaGGGCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 156835 0.66 0.97802
Target:  5'- -gGCCGGUGGgUCUUUgUCCGCG-UGc -3'
miRNA:   3'- agCGGUCGCUgAGAAAaGGGCGCuAC- -5'
30241 5' -54.1 NC_006273.1 + 62522 0.67 0.975633
Target:  5'- aCGCCAGCGGcCUCaugUUUCCCa----- -3'
miRNA:   3'- aGCGGUCGCU-GAGa--AAAGGGcgcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.