miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30241 5' -54.1 NC_006273.1 + 792 0.66 0.98587
Target:  5'- cUGCCGuugcGUGGCg----UCCCGCGGUGu -3'
miRNA:   3'- aGCGGU----CGCUGagaaaAGGGCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 21706 0.67 0.974112
Target:  5'- gUCGCCGcaggccuuugucggcGCGGCUCUUcucgCCCugGCGGUa -3'
miRNA:   3'- -AGCGGU---------------CGCUGAGAAaa--GGG--CGCUAc -5'
30241 5' -54.1 NC_006273.1 + 30694 0.7 0.883322
Target:  5'- gUGCCGGCGGCUaugaUCCUGUGGUc -3'
miRNA:   3'- aGCGGUCGCUGAgaaaAGGGCGCUAc -5'
30241 5' -54.1 NC_006273.1 + 32022 0.67 0.973061
Target:  5'- gCGCCAGaaACUCaucaCCCGCGAc- -3'
miRNA:   3'- aGCGGUCgcUGAGaaaaGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 40730 0.66 0.98587
Target:  5'- cUGCCGuugcGUGGCg----UCCCGCGGUGu -3'
miRNA:   3'- aGCGGU----CGCUGagaaaAGGGCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 44596 0.68 0.940685
Target:  5'- aCGCCaaacgcAGCGugUCUUUcaauuuUCCCaGCGGUa -3'
miRNA:   3'- aGCGG------UCGCugAGAAA------AGGG-CGCUAc -5'
30241 5' -54.1 NC_006273.1 + 46169 0.66 0.984147
Target:  5'- aCGCUAGCGAC-Cgc--CCUGCGGc- -3'
miRNA:   3'- aGCGGUCGCUGaGaaaaGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 48262 0.68 0.960809
Target:  5'- aCGgCAGCGACgUCgaagaCCCGCGGg- -3'
miRNA:   3'- aGCgGUCGCUG-AGaaaa-GGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 49947 0.75 0.661611
Target:  5'- cCGCCGGCGACgCgagagUUCCUGCGcgGu -3'
miRNA:   3'- aGCGGUCGCUGaGaa---AAGGGCGCuaC- -5'
30241 5' -54.1 NC_006273.1 + 57709 0.68 0.959402
Target:  5'- gCGUCGGCGGCUCcgagaggcgcgUCuuGCGAUc -3'
miRNA:   3'- aGCGGUCGCUGAGaaa--------AGggCGCUAc -5'
30241 5' -54.1 NC_006273.1 + 57916 0.66 0.98587
Target:  5'- -aGCguGCGGCUCUUUgccaacuagCCUGCGu-- -3'
miRNA:   3'- agCGguCGCUGAGAAAa--------GGGCGCuac -5'
30241 5' -54.1 NC_006273.1 + 58513 0.66 0.98587
Target:  5'- aCuaCAGCGugUCUUUUCaggUGCGAUu -3'
miRNA:   3'- aGcgGUCGCugAGAAAAGg--GCGCUAc -5'
30241 5' -54.1 NC_006273.1 + 62522 0.67 0.975633
Target:  5'- aCGCCAGCGGcCUCaugUUUCCCa----- -3'
miRNA:   3'- aGCGGUCGCU-GAGa--AAAGGGcgcuac -5'
30241 5' -54.1 NC_006273.1 + 63567 0.66 0.984147
Target:  5'- aUCGCCA-CGACUCUcgagcaCCUcaGCGGUGu -3'
miRNA:   3'- -AGCGGUcGCUGAGAaaa---GGG--CGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 71542 0.73 0.777979
Target:  5'- cUCGCCGGCGGCcgCUg--CCgGCGAc- -3'
miRNA:   3'- -AGCGGUCGCUGa-GAaaaGGgCGCUac -5'
30241 5' -54.1 NC_006273.1 + 75493 0.68 0.953426
Target:  5'- cCGCCGGCGcUUCggccgCCUGCGAc- -3'
miRNA:   3'- aGCGGUCGCuGAGaaaa-GGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 77158 0.67 0.970299
Target:  5'- gUCGCCGGcCGACgcgCg---CCCGCGc-- -3'
miRNA:   3'- -AGCGGUC-GCUGa--GaaaaGGGCGCuac -5'
30241 5' -54.1 NC_006273.1 + 82525 0.68 0.945158
Target:  5'- aCGCCAaCGGC-C-UUUCCCGCGGc- -3'
miRNA:   3'- aGCGGUcGCUGaGaAAAGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 90313 0.77 0.561348
Target:  5'- cCGCCAGCGGCgUCg---CCCGCGGc- -3'
miRNA:   3'- aGCGGUCGCUG-AGaaaaGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 91708 0.67 0.972525
Target:  5'- cCGCUAGcCGACgcacccgCCCGCGAa- -3'
miRNA:   3'- aGCGGUC-GCUGagaaaa-GGGCGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.