miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30241 5' -54.1 NC_006273.1 + 156835 0.66 0.97802
Target:  5'- -gGCCGGUGGgUCUUUgUCCGCG-UGc -3'
miRNA:   3'- agCGGUCGCUgAGAAAaGGGCGCuAC- -5'
30241 5' -54.1 NC_006273.1 + 138698 0.67 0.96734
Target:  5'- gCGCC-GUG-CUCUUggCgCCGCGGUGu -3'
miRNA:   3'- aGCGGuCGCuGAGAAaaG-GGCGCUAC- -5'
30241 5' -54.1 NC_006273.1 + 192652 0.67 0.96734
Target:  5'- gUCGCUAuGCGGCUCg--UCgCCGUG-UGg -3'
miRNA:   3'- -AGCGGU-CGCUGAGaaaAG-GGCGCuAC- -5'
30241 5' -54.1 NC_006273.1 + 77158 0.67 0.970299
Target:  5'- gUCGCCGGcCGACgcgCg---CCCGCGc-- -3'
miRNA:   3'- -AGCGGUC-GCUGa--GaaaaGGGCGCuac -5'
30241 5' -54.1 NC_006273.1 + 184654 0.67 0.970299
Target:  5'- gCGUCGGCGACcagaUCUggucUCCCaGCGAg- -3'
miRNA:   3'- aGCGGUCGCUG----AGAaa--AGGG-CGCUac -5'
30241 5' -54.1 NC_006273.1 + 91708 0.67 0.972525
Target:  5'- cCGCUAGcCGACgcacccgCCCGCGAa- -3'
miRNA:   3'- aGCGGUC-GCUGagaaaa-GGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 32022 0.67 0.973061
Target:  5'- gCGCCAGaaACUCaucaCCCGCGAc- -3'
miRNA:   3'- aGCGGUCgcUGAGaaaaGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 62522 0.67 0.975633
Target:  5'- aCGCCAGCGGcCUCaugUUUCCCa----- -3'
miRNA:   3'- aGCGGUCGCU-GAGa--AAAGGGcgcuac -5'
30241 5' -54.1 NC_006273.1 + 144399 0.66 0.97802
Target:  5'- uUCGUCAGCGGCugUCUgcccggCgCCGCGGc- -3'
miRNA:   3'- -AGCGGUCGCUG--AGAaaa---G-GGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 142074 0.68 0.962182
Target:  5'- cCGCCAGCGGCgacgguuaccacggCUUgcgcUgCCGCGAa- -3'
miRNA:   3'- aGCGGUCGCUGa-------------GAAa---AgGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 48262 0.68 0.960809
Target:  5'- aCGgCAGCGACgUCgaagaCCCGCGGg- -3'
miRNA:   3'- aGCgGUCGCUG-AGaaaa-GGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 57709 0.68 0.959402
Target:  5'- gCGUCGGCGGCUCcgagaggcgcgUCuuGCGAUc -3'
miRNA:   3'- aGCGGUCGCUGAGaaa--------AGggCGCUAc -5'
30241 5' -54.1 NC_006273.1 + 210011 0.7 0.909006
Target:  5'- gUCGCCAGCcggguCUCUUggaUCCCGgGGg- -3'
miRNA:   3'- -AGCGGUCGcu---GAGAAa--AGGGCgCUac -5'
30241 5' -54.1 NC_006273.1 + 136803 0.69 0.92049
Target:  5'- gUGCCGGUGuCUCgcgUCuCCGCGAg- -3'
miRNA:   3'- aGCGGUCGCuGAGaaaAG-GGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 203955 0.69 0.925886
Target:  5'- uUCGCCAGUcaaucgucuuuaGcCUCUUcUUCCCGUGAa- -3'
miRNA:   3'- -AGCGGUCG------------CuGAGAA-AAGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 44596 0.68 0.940685
Target:  5'- aCGCCaaacgcAGCGugUCUUUcaauuuUCCCaGCGGUa -3'
miRNA:   3'- aGCGG------UCGCugAGAAA------AGGG-CGCUAc -5'
30241 5' -54.1 NC_006273.1 + 82525 0.68 0.945158
Target:  5'- aCGCCAaCGGC-C-UUUCCCGCGGc- -3'
miRNA:   3'- aGCGGUcGCUGaGaAAAGGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 129578 0.68 0.953426
Target:  5'- gUCGUCGGCGGCUCcgcuaUgCCGCGccGg -3'
miRNA:   3'- -AGCGGUCGCUGAGaaa--AgGGCGCuaC- -5'
30241 5' -54.1 NC_006273.1 + 75493 0.68 0.953426
Target:  5'- cCGCCGGCGcUUCggccgCCUGCGAc- -3'
miRNA:   3'- aGCGGUCGCuGAGaaaa-GGGCGCUac -5'
30241 5' -54.1 NC_006273.1 + 185068 0.68 0.956856
Target:  5'- gCGCCGGCGACguggucucauaguUCUcggcccacaucUUUUCgGCGAUGu -3'
miRNA:   3'- aGCGGUCGCUG-------------AGA-----------AAAGGgCGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.