Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30242 | 5' | -51.5 | NC_006273.1 | + | 86709 | 0.66 | 0.994348 |
Target: 5'- aGCCCACGaugUCGGGCAgGc-- -3' miRNA: 3'- gCGGGUGCca-GGCCCGUgUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 35972 | 0.66 | 0.994348 |
Target: 5'- aCGCUCgcGCGGcUUCGGGCGCu--- -3' miRNA: 3'- -GCGGG--UGCC-AGGCCCGUGuuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 87982 | 0.66 | 0.994348 |
Target: 5'- gCGCCgACGccaCUGGGCGCGAa- -3' miRNA: 3'- -GCGGgUGCca-GGCCCGUGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 94129 | 0.66 | 0.994348 |
Target: 5'- aGCCC-CGuG-CCGGGCAUgGGUCg -3' miRNA: 3'- gCGGGuGC-CaGGCCCGUG-UUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 222444 | 0.66 | 0.993458 |
Target: 5'- aCGCuCCACGGUCCcaaaGCGGUCc -3' miRNA: 3'- -GCG-GGUGCCAGGcccgUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 227107 | 0.66 | 0.993458 |
Target: 5'- cCGCCCACGGcggCgUGGGUAUGcgCc -3' miRNA: 3'- -GCGGGUGCCa--G-GCCCGUGUuaG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 170882 | 0.66 | 0.993458 |
Target: 5'- aGCCgGCGGg-CGGGU-CGAUCg -3' miRNA: 3'- gCGGgUGCCagGCCCGuGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 78689 | 0.66 | 0.993458 |
Target: 5'- gGUCCGCGGgcaccgCCGccggaGGCGCGGUUc -3' miRNA: 3'- gCGGGUGCCa-----GGC-----CCGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 58003 | 0.66 | 0.993458 |
Target: 5'- uGUgCGCGGUuuGGGCAacgcccuGUCu -3' miRNA: 3'- gCGgGUGCCAggCCCGUgu-----UAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 88893 | 0.66 | 0.993458 |
Target: 5'- uCGCCCAU-GUCaccuauGGGCACAuUCu -3' miRNA: 3'- -GCGGGUGcCAGg-----CCCGUGUuAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 117187 | 0.66 | 0.993363 |
Target: 5'- gCGUCCGCcgagcGUUCGGGCgacagccGCAGUCa -3' miRNA: 3'- -GCGGGUGc----CAGGCCCG-------UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 2027 | 0.66 | 0.992459 |
Target: 5'- cCGCCgGCGGggacgcgCCGuGCGCGAUg -3' miRNA: 3'- -GCGGgUGCCa------GGCcCGUGUUAg -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 170744 | 0.66 | 0.992459 |
Target: 5'- gCGCCCAacaGGUCCacggGGGUggcagcguggAUAAUCa -3' miRNA: 3'- -GCGGGUg--CCAGG----CCCG----------UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 196920 | 0.66 | 0.992459 |
Target: 5'- cCGCCgGCGGggacgcgCCGuGCGCGAUg -3' miRNA: 3'- -GCGGgUGCCa------GGCcCGUGUUAg -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 15965 | 0.66 | 0.992459 |
Target: 5'- cCGUauCUACGuGUCCGGGcCACAGg- -3' miRNA: 3'- -GCG--GGUGC-CAGGCCC-GUGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 188143 | 0.66 | 0.992459 |
Target: 5'- gGCCgGCGGgCCGGGuCGCcgaguuccgGGUCg -3' miRNA: 3'- gCGGgUGCCaGGCCC-GUG---------UUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 188847 | 0.66 | 0.992459 |
Target: 5'- aGCCCgACGGUgCGcGGCA--GUCu -3' miRNA: 3'- gCGGG-UGCCAgGC-CCGUguUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 211155 | 0.66 | 0.992459 |
Target: 5'- gGCCCGCGGUUCuaacaGGCuuGAUUg -3' miRNA: 3'- gCGGGUGCCAGGc----CCGugUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 188956 | 0.66 | 0.992459 |
Target: 5'- uCGUCCACGGggagaaCGGGCAguGg- -3' miRNA: 3'- -GCGGGUGCCag----GCCCGUguUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 102849 | 0.66 | 0.992352 |
Target: 5'- gCGUCCACGGgcacgCUguuggguGGGCACGcgCu -3' miRNA: 3'- -GCGGGUGCCa----GG-------CCCGUGUuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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