miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 102849 0.66 0.992352
Target:  5'- gCGUCCACGGgcacgCUguuggguGGGCACGcgCu -3'
miRNA:   3'- -GCGGGUGCCa----GG-------CCCGUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 222444 0.66 0.993458
Target:  5'- aCGCuCCACGGUCCcaaaGCGGUCc -3'
miRNA:   3'- -GCG-GGUGCCAGGcccgUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 88893 0.66 0.993458
Target:  5'- uCGCCCAU-GUCaccuauGGGCACAuUCu -3'
miRNA:   3'- -GCGGGUGcCAGg-----CCCGUGUuAG- -5'
30242 5' -51.5 NC_006273.1 + 188847 0.66 0.992459
Target:  5'- aGCCCgACGGUgCGcGGCA--GUCu -3'
miRNA:   3'- gCGGG-UGCCAgGC-CCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 188143 0.66 0.992459
Target:  5'- gGCCgGCGGgCCGGGuCGCcgaguuccgGGUCg -3'
miRNA:   3'- gCGGgUGCCaGGCCC-GUG---------UUAG- -5'
30242 5' -51.5 NC_006273.1 + 86709 0.66 0.994348
Target:  5'- aGCCCACGaugUCGGGCAgGc-- -3'
miRNA:   3'- gCGGGUGCca-GGCCCGUgUuag -5'
30242 5' -51.5 NC_006273.1 + 211155 0.66 0.992459
Target:  5'- gGCCCGCGGUUCuaacaGGCuuGAUUg -3'
miRNA:   3'- gCGGGUGCCAGGc----CCGugUUAG- -5'
30242 5' -51.5 NC_006273.1 + 15965 0.66 0.992459
Target:  5'- cCGUauCUACGuGUCCGGGcCACAGg- -3'
miRNA:   3'- -GCG--GGUGC-CAGGCCC-GUGUUag -5'
30242 5' -51.5 NC_006273.1 + 94509 0.66 0.990098
Target:  5'- cCGUCCGCGGcCCGGGgGgAc-- -3'
miRNA:   3'- -GCGGGUGCCaGGCCCgUgUuag -5'
30242 5' -51.5 NC_006273.1 + 94217 0.66 0.990098
Target:  5'- uGCCCGCcGcCCcccGGCGCAGUCc -3'
miRNA:   3'- gCGGGUGcCaGGc--CCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 196920 0.66 0.992459
Target:  5'- cCGCCgGCGGggacgcgCCGuGCGCGAUg -3'
miRNA:   3'- -GCGGgUGCCa------GGCcCGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 197204 0.66 0.991342
Target:  5'- uGCCCGCuGGa-CGGGCACGu-- -3'
miRNA:   3'- gCGGGUG-CCagGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 170744 0.66 0.992459
Target:  5'- gCGCCCAacaGGUCCacggGGGUggcagcguggAUAAUCa -3'
miRNA:   3'- -GCGGGUg--CCAGG----CCCG----------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 106148 0.66 0.988719
Target:  5'- aCGCCCACuaugaGGgcgcagauaCCGGGCGCGu-- -3'
miRNA:   3'- -GCGGGUG-----CCa--------GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 103266 0.66 0.988719
Target:  5'- gGCagguguaCGCGGUagaCGGGCAgCGGUCg -3'
miRNA:   3'- gCGg------GUGCCAg--GCCCGU-GUUAG- -5'
30242 5' -51.5 NC_006273.1 + 156711 0.66 0.988574
Target:  5'- uGCCCGCGGaccCCGGccccuucucgcguGCGCGGUg -3'
miRNA:   3'- gCGGGUGCCa--GGCC-------------CGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 124470 0.66 0.990098
Target:  5'- gCGCUCGCGGUCCaGcCGCA-UCa -3'
miRNA:   3'- -GCGGGUGCCAGGcCcGUGUuAG- -5'
30242 5' -51.5 NC_006273.1 + 164677 0.66 0.988719
Target:  5'- uGCUCG-GGUgCCGGGUACAccAUCu -3'
miRNA:   3'- gCGGGUgCCA-GGCCCGUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 147602 0.66 0.989288
Target:  5'- gGCUCACGacgcgguuugagcacGUCCGGGCG--GUCg -3'
miRNA:   3'- gCGGGUGC---------------CAGGCCCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 151651 0.66 0.990098
Target:  5'- aGCgaCuCGGUgCCGGGCACGAa- -3'
miRNA:   3'- gCGg-GuGCCA-GGCCCGUGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.