miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 98161 0.67 0.985518
Target:  5'- aGCUCcuGCGGUuuGGGCGCc--- -3'
miRNA:   3'- gCGGG--UGCCAggCCCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 197256 0.67 0.987195
Target:  5'- uGCgCGCGGgcgugCUGGGCGCGc-- -3'
miRNA:   3'- gCGgGUGCCa----GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 123626 0.67 0.985693
Target:  5'- aGCCUgggcguGCGGgaaagagagagaaggCCGGGCGCAcGUCa -3'
miRNA:   3'- gCGGG------UGCCa--------------GGCCCGUGU-UAG- -5'
30242 5' -51.5 NC_006273.1 + 235301 0.67 0.985518
Target:  5'- aCGCCCGCGacacacCCGcGGCACAc-- -3'
miRNA:   3'- -GCGGGUGCca----GGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 182300 0.67 0.983677
Target:  5'- -cCCCACGuGUCuUGGGCGC-GUCa -3'
miRNA:   3'- gcGGGUGC-CAG-GCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 57041 0.67 0.983677
Target:  5'- gCGUCCGCGGcCCGcGaGCGCAu-- -3'
miRNA:   3'- -GCGGGUGCCaGGC-C-CGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 139609 0.67 0.981664
Target:  5'- gGCgC-CGGUUgGGGUGCGGUCa -3'
miRNA:   3'- gCGgGuGCCAGgCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 31376 0.67 0.981664
Target:  5'- aCGuCCCugGGUCCGaGGUcgGCAc-- -3'
miRNA:   3'- -GC-GGGugCCAGGC-CCG--UGUuag -5'
30242 5' -51.5 NC_006273.1 + 99297 0.67 0.979471
Target:  5'- cCGCCCACGGcgUCCucGGCGucGUCg -3'
miRNA:   3'- -GCGGGUGCC--AGGc-CCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 202168 0.67 0.987195
Target:  5'- gGCCCuCGGUgcgcuaCCGGGCccACAuUCa -3'
miRNA:   3'- gCGGGuGCCA------GGCCCG--UGUuAG- -5'
30242 5' -51.5 NC_006273.1 + 16872 0.67 0.983677
Target:  5'- uCGCCgcuacgaaCACGGUCUGcGGCGCGc-- -3'
miRNA:   3'- -GCGG--------GUGCCAGGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 40408 0.67 0.985518
Target:  5'- aCGCCCGCGacacacCCGcGGCACAc-- -3'
miRNA:   3'- -GCGGGUGCca----GGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 214859 0.67 0.979471
Target:  5'- gCGCCUgcaugguggcgACGGUCUcGGCACAAa- -3'
miRNA:   3'- -GCGGG-----------UGCCAGGcCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 53771 0.67 0.981664
Target:  5'- aCGUgCACcGUCUGGGCcggGCAAUCc -3'
miRNA:   3'- -GCGgGUGcCAGGCCCG---UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 101757 0.67 0.983677
Target:  5'- uCGCCgGCGGcaUGGGCGC-GUCg -3'
miRNA:   3'- -GCGGgUGCCagGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 38023 0.67 0.985518
Target:  5'- gCGCCCugGGUCUGacGCuccaaagcguacGCAGUCu -3'
miRNA:   3'- -GCGGGugCCAGGCc-CG------------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 86909 0.67 0.985518
Target:  5'- gGCCgCcCGGUCCGgcuGGCGCGAg- -3'
miRNA:   3'- gCGG-GuGCCAGGC---CCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 470 0.67 0.985518
Target:  5'- aCGCCCGCGacacacCCGcGGCACAc-- -3'
miRNA:   3'- -GCGGGUGCca----GGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 40537 0.67 0.985518
Target:  5'- cCGCUCACGGggaCCGaGgGCGGUCg -3'
miRNA:   3'- -GCGGGUGCCa--GGCcCgUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 117229 0.67 0.985518
Target:  5'- aCGCCgGCGGcUgGGGCGCGc-- -3'
miRNA:   3'- -GCGGgUGCCaGgCCCGUGUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.