Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30242 | 5' | -51.5 | NC_006273.1 | + | 176090 | 0.71 | 0.895043 |
Target: 5'- gGCCCACGaUCCGGGUu--AUCu -3' miRNA: 3'- gCGGGUGCcAGGCCCGuguUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 195969 | 0.71 | 0.901701 |
Target: 5'- -cCCCGCGGgccgCCGGGCGCc--- -3' miRNA: 3'- gcGGGUGCCa---GGCCCGUGuuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 58178 | 0.71 | 0.908113 |
Target: 5'- -aCUCACGGUUgggCGGGCACAAUg -3' miRNA: 3'- gcGGGUGCCAG---GCCCGUGUUAg -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 232952 | 0.7 | 0.936392 |
Target: 5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3' miRNA: 3'- gCGGGUGCCAGG-----CCCGU-GUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 113141 | 0.7 | 0.943177 |
Target: 5'- uGCCCcuaaGCGGUggucgccacuaucacCCGGGCACuuuuGAUCg -3' miRNA: 3'- gCGGG----UGCCA---------------GGCCCGUG----UUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 150557 | 0.7 | 0.936392 |
Target: 5'- gGCCCACGGgccaaCCGucCACGGUCu -3' miRNA: 3'- gCGGGUGCCa----GGCccGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 43345 | 0.7 | 0.933333 |
Target: 5'- gCGCCCGCGGUCUGcuauucguccacgauGGaCACcAUCa -3' miRNA: 3'- -GCGGGUGCCAGGC---------------CC-GUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 129172 | 0.7 | 0.925841 |
Target: 5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3' miRNA: 3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 185487 | 0.7 | 0.943177 |
Target: 5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3' miRNA: 3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 38059 | 0.7 | 0.936392 |
Target: 5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3' miRNA: 3'- gCGGGUGCCAGG-----CCCGU-GUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 220028 | 0.7 | 0.920184 |
Target: 5'- aCGCUCGuggUGGUgCGGGCACAGa- -3' miRNA: 3'- -GCGGGU---GCCAgGCCCGUGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 46338 | 0.7 | 0.925841 |
Target: 5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3' miRNA: 3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 64905 | 0.69 | 0.962068 |
Target: 5'- gGCUaCAUGuGUCCGGGCAUcuUCg -3' miRNA: 3'- gCGG-GUGC-CAGGCCCGUGuuAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 64248 | 0.69 | 0.945935 |
Target: 5'- gGCCCGCGGgcaCGGGCGu---- -3' miRNA: 3'- gCGGGUGCCag-GCCCGUguuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 69924 | 0.69 | 0.954484 |
Target: 5'- gCGCCCguuGGUgaauguuaCCGGGCGCGAUg -3' miRNA: 3'- -GCGGGug-CCA--------GGCCCGUGUUAg -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 29073 | 0.69 | 0.954484 |
Target: 5'- gGCCC-CGGUCgCGGGUAguAUg -3' miRNA: 3'- gCGGGuGCCAG-GCCCGUguUAg -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 112266 | 0.69 | 0.962068 |
Target: 5'- uGCUCAUGGaCCGGGUGCGc-- -3' miRNA: 3'- gCGGGUGCCaGGCCCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 78517 | 0.69 | 0.954484 |
Target: 5'- gCGCCgCcCGGacaCCGGGCGCcGUCa -3' miRNA: 3'- -GCGG-GuGCCa--GGCCCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 116876 | 0.69 | 0.963473 |
Target: 5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3' miRNA: 3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 211539 | 0.69 | 0.962068 |
Target: 5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3' miRNA: 3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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