miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 226519 1.07 0.011163
Target:  5'- gCGCCCACGGUCCGGGCACAAUCa -3'
miRNA:   3'- -GCGGGUGCCAGGCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 81292 0.84 0.295223
Target:  5'- gCGUCCGCGGUUCGGGCACuaguUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCCGUGuu--AG- -5'
30242 5' -51.5 NC_006273.1 + 145606 0.8 0.481744
Target:  5'- gGCCCgagcgACGGUCUGGGCgGCGGUCg -3'
miRNA:   3'- gCGGG-----UGCCAGGCCCG-UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 15140 0.79 0.531661
Target:  5'- aCGUCCGCGG-CCGGGaCGCAGUUu -3'
miRNA:   3'- -GCGGGUGCCaGGCCC-GUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 69544 0.74 0.749626
Target:  5'- gCGCCCACGGUCUGGccguCAUcGUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCc---GUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 117977 0.74 0.749626
Target:  5'- gGCCgagCACGG-CCGGGCACGAa- -3'
miRNA:   3'- gCGG---GUGCCaGGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 99272 0.73 0.833426
Target:  5'- cCGCUCGCGGUCaaaaGCGCGAUCg -3'
miRNA:   3'- -GCGGGUGCCAGgcc-CGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 195927 0.73 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 1034 0.73 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 65813 0.73 0.841884
Target:  5'- uCGCCCcuGCGGUCCGcaaucggcGGCGCAGc- -3'
miRNA:   3'- -GCGGG--UGCCAGGC--------CCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 84780 0.72 0.85014
Target:  5'- aCGCCCGCGGUCgaggaggagGGGUACGGa- -3'
miRNA:   3'- -GCGGGUGCCAGg--------CCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 150022 0.72 0.873622
Target:  5'- uGCUCACGGcuugcguggaggUCUGGGCGCGAg- -3'
miRNA:   3'- gCGGGUGCC------------AGGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 102391 0.72 0.880999
Target:  5'- uGUUCGCGGUaggcgUCGGGCACGAUg -3'
miRNA:   3'- gCGGGUGCCA-----GGCCCGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 88512 0.72 0.880999
Target:  5'- -uUCCACGcUCaCGGGCACGGUCa -3'
miRNA:   3'- gcGGGUGCcAG-GCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 199661 0.72 0.880999
Target:  5'- gCGCCCGagaucUGGgucUCCGGGCACGggCa -3'
miRNA:   3'- -GCGGGU-----GCC---AGGCCCGUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 166585 0.72 0.880999
Target:  5'- cCGgCUACGcGUCCGGGUucCAGUCg -3'
miRNA:   3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5'
30242 5' -51.5 NC_006273.1 + 89354 0.71 0.895043
Target:  5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3'
miRNA:   3'- gCGGGugCCA---GGCCCG----UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 140247 0.71 0.895043
Target:  5'- aGCCgCgACGGUUCGGGCGgAGUUu -3'
miRNA:   3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5'
30242 5' -51.5 NC_006273.1 + 176090 0.71 0.895043
Target:  5'- gGCCCACGaUCCGGGUu--AUCu -3'
miRNA:   3'- gCGGGUGCcAGGCCCGuguUAG- -5'
30242 5' -51.5 NC_006273.1 + 195969 0.71 0.901701
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.