miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 193980 0.71 0.901701
Target:  5'- uCGCCCugGGcUCCGacGGCGCcGUUg -3'
miRNA:   3'- -GCGGGugCC-AGGC--CCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 1076 0.71 0.901701
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 58178 0.71 0.908113
Target:  5'- -aCUCACGGUUgggCGGGCACAAUg -3'
miRNA:   3'- gcGGGUGCCAG---GCCCGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 220028 0.7 0.920184
Target:  5'- aCGCUCGuggUGGUgCGGGCACAGa- -3'
miRNA:   3'- -GCGGGU---GCCAgGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 46338 0.7 0.925841
Target:  5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3'
miRNA:   3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 129172 0.7 0.925841
Target:  5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3'
miRNA:   3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 43345 0.7 0.933333
Target:  5'- gCGCCCGCGGUCUGcuauucguccacgauGGaCACcAUCa -3'
miRNA:   3'- -GCGGGUGCCAGGC---------------CC-GUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 150557 0.7 0.936392
Target:  5'- gGCCCACGGgccaaCCGucCACGGUCu -3'
miRNA:   3'- gCGGGUGCCa----GGCccGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 38059 0.7 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
30242 5' -51.5 NC_006273.1 + 232952 0.7 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
30242 5' -51.5 NC_006273.1 + 113141 0.7 0.943177
Target:  5'- uGCCCcuaaGCGGUggucgccacuaucacCCGGGCACuuuuGAUCg -3'
miRNA:   3'- gCGGG----UGCCA---------------GGCCCGUG----UUAG- -5'
30242 5' -51.5 NC_006273.1 + 185487 0.7 0.943177
Target:  5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3'
miRNA:   3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 64248 0.69 0.945935
Target:  5'- gGCCCGCGGgcaCGGGCGu---- -3'
miRNA:   3'- gCGGGUGCCag-GCCCGUguuag -5'
30242 5' -51.5 NC_006273.1 + 69924 0.69 0.954484
Target:  5'- gCGCCCguuGGUgaauguuaCCGGGCGCGAUg -3'
miRNA:   3'- -GCGGGug-CCA--------GGCCCGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 29073 0.69 0.954484
Target:  5'- gGCCC-CGGUCgCGGGUAguAUg -3'
miRNA:   3'- gCGGGuGCCAG-GCCCGUguUAg -5'
30242 5' -51.5 NC_006273.1 + 78517 0.69 0.954484
Target:  5'- gCGCCgCcCGGacaCCGGGCGCcGUCa -3'
miRNA:   3'- -GCGG-GuGCCa--GGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 129044 0.69 0.958394
Target:  5'- aGUCCAUcuuUCCGGGCACcAUCg -3'
miRNA:   3'- gCGGGUGcc-AGGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 211539 0.69 0.962068
Target:  5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3'
miRNA:   3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 112266 0.69 0.962068
Target:  5'- uGCUCAUGGaCCGGGUGCGc-- -3'
miRNA:   3'- gCGGGUGCCaGGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 64905 0.69 0.962068
Target:  5'- gGCUaCAUGuGUCCGGGCAUcuUCg -3'
miRNA:   3'- gCGG-GUGC-CAGGCCCGUGuuAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.