miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 116876 0.69 0.963473
Target:  5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3'
miRNA:   3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 146810 0.68 0.965177
Target:  5'- gCGCCCAUGG-CCGccacuguGGCGCGugaAUCg -3'
miRNA:   3'- -GCGGGUGCCaGGC-------CCGUGU---UAG- -5'
30242 5' -51.5 NC_006273.1 + 82006 0.68 0.965511
Target:  5'- gGCCaACGGUCgacgcaGGGCACGcgCg -3'
miRNA:   3'- gCGGgUGCCAGg-----CCCGUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 116028 0.68 0.965511
Target:  5'- aGCCC-CGGgaaggCCuGGCGCAGUUc -3'
miRNA:   3'- gCGGGuGCCa----GGcCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 79947 0.68 0.965511
Target:  5'- -aCCCGCGucgCCGGGCACGGc- -3'
miRNA:   3'- gcGGGUGCca-GGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 99361 0.68 0.968727
Target:  5'- gGCCCGCGGaUCGGccaGCGCuGUCu -3'
miRNA:   3'- gCGGGUGCCaGGCC---CGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 173656 0.68 0.968727
Target:  5'- gCGCUCGCGGUCacguccuGGGCAUccaccgcgccGAUCu -3'
miRNA:   3'- -GCGGGUGCCAGg------CCCGUG----------UUAG- -5'
30242 5' -51.5 NC_006273.1 + 72353 0.68 0.968727
Target:  5'- uCGCCCGCGcUgUGGGCGCugcugGGUCg -3'
miRNA:   3'- -GCGGGUGCcAgGCCCGUG-----UUAG- -5'
30242 5' -51.5 NC_006273.1 + 142745 0.68 0.971434
Target:  5'- uGCUCACGGUCuggauguCGGGCcUGAUCc -3'
miRNA:   3'- gCGGGUGCCAG-------GCCCGuGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 205349 0.68 0.971434
Target:  5'- uGCCCGUGGUcuggccgCCGGGCugGAa- -3'
miRNA:   3'- gCGGGUGCCA-------GGCCCGugUUag -5'
30242 5' -51.5 NC_006273.1 + 81748 0.68 0.971724
Target:  5'- aGCCCugcGCGGagCCGGGCuGCGAa- -3'
miRNA:   3'- gCGGG---UGCCa-GGCCCG-UGUUag -5'
30242 5' -51.5 NC_006273.1 + 47444 0.68 0.971724
Target:  5'- aCGCCCGCGagcgcggcgaGUUCGGGgACGAg- -3'
miRNA:   3'- -GCGGGUGC----------CAGGCCCgUGUUag -5'
30242 5' -51.5 NC_006273.1 + 80701 0.68 0.971724
Target:  5'- gCGUCuCACGGcuaUCGGGCGCGGUg -3'
miRNA:   3'- -GCGG-GUGCCa--GGCCCGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 94672 0.68 0.974509
Target:  5'- -cCCCACGGg--GGGCugGGUCg -3'
miRNA:   3'- gcGGGUGCCaggCCCGugUUAG- -5'
30242 5' -51.5 NC_006273.1 + 101022 0.68 0.975565
Target:  5'- gCGCCagcaucuguuguuguUGCGGUCCGGcGgACGAUCc -3'
miRNA:   3'- -GCGG---------------GUGCCAGGCC-CgUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 205230 0.68 0.975565
Target:  5'- aCGCCCAuCGGcgucccggaaucguaUaCCGGGCACAc-- -3'
miRNA:   3'- -GCGGGU-GCC---------------A-GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 103181 0.68 0.977089
Target:  5'- gGCCCgauguggcuGCGGccgCCGaGCACAAUCg -3'
miRNA:   3'- gCGGG---------UGCCa--GGCcCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 213692 0.68 0.977089
Target:  5'- uCGCaggaGCGGUCCGaguGGCGCAGgUCg -3'
miRNA:   3'- -GCGgg--UGCCAGGC---CCGUGUU-AG- -5'
30242 5' -51.5 NC_006273.1 + 169570 0.67 0.979471
Target:  5'- uGUgUACGGUgCGGGagaACGAUCa -3'
miRNA:   3'- gCGgGUGCCAgGCCCg--UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 142841 0.67 0.979471
Target:  5'- uGCUCACGGcCaCGGGCuGCuGUCu -3'
miRNA:   3'- gCGGGUGCCaG-GCCCG-UGuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.