Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30242 | 5' | -51.5 | NC_006273.1 | + | 142841 | 0.67 | 0.979471 |
Target: 5'- uGCUCACGGcCaCGGGCuGCuGUCu -3' miRNA: 3'- gCGGGUGCCaG-GCCCG-UGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 99297 | 0.67 | 0.979471 |
Target: 5'- cCGCCCACGGcgUCCucGGCGucGUCg -3' miRNA: 3'- -GCGGGUGCC--AGGc-CCGUguUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 53771 | 0.67 | 0.981664 |
Target: 5'- aCGUgCACcGUCUGGGCcggGCAAUCc -3' miRNA: 3'- -GCGgGUGcCAGGCCCG---UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 139609 | 0.67 | 0.981664 |
Target: 5'- gGCgC-CGGUUgGGGUGCGGUCa -3' miRNA: 3'- gCGgGuGCCAGgCCCGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 31376 | 0.67 | 0.981664 |
Target: 5'- aCGuCCCugGGUCCGaGGUcgGCAc-- -3' miRNA: 3'- -GC-GGGugCCAGGC-CCG--UGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 57041 | 0.67 | 0.983677 |
Target: 5'- gCGUCCGCGGcCCGcGaGCGCAu-- -3' miRNA: 3'- -GCGGGUGCCaGGC-C-CGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 182300 | 0.67 | 0.983677 |
Target: 5'- -cCCCACGuGUCuUGGGCGC-GUCa -3' miRNA: 3'- gcGGGUGC-CAG-GCCCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 101757 | 0.67 | 0.983677 |
Target: 5'- uCGCCgGCGGcaUGGGCGC-GUCg -3' miRNA: 3'- -GCGGgUGCCagGCCCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 16872 | 0.67 | 0.983677 |
Target: 5'- uCGCCgcuacgaaCACGGUCUGcGGCGCGc-- -3' miRNA: 3'- -GCGG--------GUGCCAGGC-CCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 117229 | 0.67 | 0.985518 |
Target: 5'- aCGCCgGCGGcUgGGGCGCGc-- -3' miRNA: 3'- -GCGGgUGCCaGgCCCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 86909 | 0.67 | 0.985518 |
Target: 5'- gGCCgCcCGGUCCGgcuGGCGCGAg- -3' miRNA: 3'- gCGG-GuGCCAGGC---CCGUGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 38023 | 0.67 | 0.985518 |
Target: 5'- gCGCCCugGGUCUGacGCuccaaagcguacGCAGUCu -3' miRNA: 3'- -GCGGGugCCAGGCc-CG------------UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 470 | 0.67 | 0.985518 |
Target: 5'- aCGCCCGCGacacacCCGcGGCACAc-- -3' miRNA: 3'- -GCGGGUGCca----GGC-CCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 40537 | 0.67 | 0.985518 |
Target: 5'- cCGCUCACGGggaCCGaGgGCGGUCg -3' miRNA: 3'- -GCGGGUGCCa--GGCcCgUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 235301 | 0.67 | 0.985518 |
Target: 5'- aCGCCCGCGacacacCCGcGGCACAc-- -3' miRNA: 3'- -GCGGGUGCca----GGC-CCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 165637 | 0.67 | 0.985518 |
Target: 5'- aCGCagCACGGUgCCGcGGCcCGGUCu -3' miRNA: 3'- -GCGg-GUGCCA-GGC-CCGuGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 156873 | 0.67 | 0.985518 |
Target: 5'- gCGCCCGguGUCCGGGCGg---- -3' miRNA: 3'- -GCGGGUgcCAGGCCCGUguuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 40408 | 0.67 | 0.985518 |
Target: 5'- aCGCCCGCGacacacCCGcGGCACAc-- -3' miRNA: 3'- -GCGGGUGCca----GGC-CCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 98161 | 0.67 | 0.985518 |
Target: 5'- aGCUCcuGCGGUuuGGGCGCc--- -3' miRNA: 3'- gCGGG--UGCCAggCCCGUGuuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 123626 | 0.67 | 0.985693 |
Target: 5'- aGCCUgggcguGCGGgaaagagagagaaggCCGGGCGCAcGUCa -3' miRNA: 3'- gCGGG------UGCCa--------------GGCCCGUGU-UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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