miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 121868 0.67 0.987195
Target:  5'- cCGCCCGCGcGccccCCGGGCAa---- -3'
miRNA:   3'- -GCGGGUGC-Ca---GGCCCGUguuag -5'
30242 5' -51.5 NC_006273.1 + 2363 0.67 0.987195
Target:  5'- uGCgCGCGGgcgugCUGGGCGCGc-- -3'
miRNA:   3'- gCGgGUGCCa----GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 202168 0.67 0.987195
Target:  5'- gGCCCuCGGUgcgcuaCCGGGCccACAuUCa -3'
miRNA:   3'- gCGGGuGCCA------GGCCCG--UGUuAG- -5'
30242 5' -51.5 NC_006273.1 + 2207 0.67 0.987195
Target:  5'- cCGCaCAUGGcgCUGGGCACGAc- -3'
miRNA:   3'- -GCGgGUGCCa-GGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 197256 0.67 0.987195
Target:  5'- uGCgCGCGGgcgugCUGGGCGCGc-- -3'
miRNA:   3'- gCGgGUGCCa----GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 156711 0.66 0.988574
Target:  5'- uGCCCGCGGaccCCGGccccuucucgcguGCGCGGUg -3'
miRNA:   3'- gCGGGUGCCa--GGCC-------------CGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 103266 0.66 0.988719
Target:  5'- gGCagguguaCGCGGUagaCGGGCAgCGGUCg -3'
miRNA:   3'- gCGg------GUGCCAg--GCCCGU-GUUAG- -5'
30242 5' -51.5 NC_006273.1 + 90976 0.66 0.988719
Target:  5'- cCGCcgCCGCGGcgCCGGGCAgAc-- -3'
miRNA:   3'- -GCG--GGUGCCa-GGCCCGUgUuag -5'
30242 5' -51.5 NC_006273.1 + 18879 0.66 0.988719
Target:  5'- gCGCUggCACGGcgcaCUGGGCACcAUCa -3'
miRNA:   3'- -GCGG--GUGCCa---GGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 106148 0.66 0.988719
Target:  5'- aCGCCCACuaugaGGgcgcagauaCCGGGCGCGu-- -3'
miRNA:   3'- -GCGGGUG-----CCa--------GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 164677 0.66 0.988719
Target:  5'- uGCUCG-GGUgCCGGGUACAccAUCu -3'
miRNA:   3'- gCGGGUgCCA-GGCCCGUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 147602 0.66 0.989288
Target:  5'- gGCUCACGacgcgguuugagcacGUCCGGGCG--GUCg -3'
miRNA:   3'- gCGGGUGC---------------CAGGCCCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 151651 0.66 0.990098
Target:  5'- aGCgaCuCGGUgCCGGGCACGAa- -3'
miRNA:   3'- gCGg-GuGCCA-GGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 94217 0.66 0.990098
Target:  5'- uGCCCGCcGcCCcccGGCGCAGUCc -3'
miRNA:   3'- gCGGGUGcCaGGc--CCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 94509 0.66 0.990098
Target:  5'- cCGUCCGCGGcCCGGGgGgAc-- -3'
miRNA:   3'- -GCGGGUGCCaGGCCCgUgUuag -5'
30242 5' -51.5 NC_006273.1 + 193146 0.66 0.990098
Target:  5'- gGCCCAUGGUUCucuGGCACc--- -3'
miRNA:   3'- gCGGGUGCCAGGc--CCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 124470 0.66 0.990098
Target:  5'- gCGCUCGCGGUCCaGcCGCA-UCa -3'
miRNA:   3'- -GCGGGUGCCAGGcCcGUGUuAG- -5'
30242 5' -51.5 NC_006273.1 + 6258 0.66 0.990612
Target:  5'- uCGCCgGCGGcgaaacaaccagcgCCGGGUacuguggcGCAGUCg -3'
miRNA:   3'- -GCGGgUGCCa-------------GGCCCG--------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 197204 0.66 0.991342
Target:  5'- uGCCCGCuGGa-CGGGCACGu-- -3'
miRNA:   3'- gCGGGUG-CCagGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 213795 0.66 0.991342
Target:  5'- uGCCCGCGGUCUcGGUgaugagACGAa- -3'
miRNA:   3'- gCGGGUGCCAGGcCCG------UGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.