miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 470 0.67 0.985518
Target:  5'- aCGCCCGCGacacacCCGcGGCACAc-- -3'
miRNA:   3'- -GCGGGUGCca----GGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 1034 0.73 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 1076 0.71 0.901701
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 2027 0.66 0.992459
Target:  5'- cCGCCgGCGGggacgcgCCGuGCGCGAUg -3'
miRNA:   3'- -GCGGgUGCCa------GGCcCGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 2207 0.67 0.987195
Target:  5'- cCGCaCAUGGcgCUGGGCACGAc- -3'
miRNA:   3'- -GCGgGUGCCa-GGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 2311 0.66 0.991342
Target:  5'- uGCCCGCuGGa-CGGGCACGu-- -3'
miRNA:   3'- gCGGGUG-CCagGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 2363 0.67 0.987195
Target:  5'- uGCgCGCGGgcgugCUGGGCGCGc-- -3'
miRNA:   3'- gCGgGUGCCa----GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 6258 0.66 0.990612
Target:  5'- uCGCCgGCGGcgaaacaaccagcgCCGGGUacuguggcGCAGUCg -3'
miRNA:   3'- -GCGGgUGCCa-------------GGCCCG--------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 15140 0.79 0.531661
Target:  5'- aCGUCCGCGG-CCGGGaCGCAGUUu -3'
miRNA:   3'- -GCGGGUGCCaGGCCC-GUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 15965 0.66 0.992459
Target:  5'- cCGUauCUACGuGUCCGGGcCACAGg- -3'
miRNA:   3'- -GCG--GGUGC-CAGGCCC-GUGUUag -5'
30242 5' -51.5 NC_006273.1 + 16872 0.67 0.983677
Target:  5'- uCGCCgcuacgaaCACGGUCUGcGGCGCGc-- -3'
miRNA:   3'- -GCGG--------GUGCCAGGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 18879 0.66 0.988719
Target:  5'- gCGCUggCACGGcgcaCUGGGCACcAUCa -3'
miRNA:   3'- -GCGG--GUGCCa---GGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 29073 0.69 0.954484
Target:  5'- gGCCC-CGGUCgCGGGUAguAUg -3'
miRNA:   3'- gCGGGuGCCAG-GCCCGUguUAg -5'
30242 5' -51.5 NC_006273.1 + 31376 0.67 0.981664
Target:  5'- aCGuCCCugGGUCCGaGGUcgGCAc-- -3'
miRNA:   3'- -GC-GGGugCCAGGC-CCG--UGUuag -5'
30242 5' -51.5 NC_006273.1 + 35972 0.66 0.994348
Target:  5'- aCGCUCgcGCGGcUUCGGGCGCu--- -3'
miRNA:   3'- -GCGGG--UGCC-AGGCCCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 38023 0.67 0.985518
Target:  5'- gCGCCCugGGUCUGacGCuccaaagcguacGCAGUCu -3'
miRNA:   3'- -GCGGGugCCAGGCc-CG------------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 38059 0.7 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
30242 5' -51.5 NC_006273.1 + 40408 0.67 0.985518
Target:  5'- aCGCCCGCGacacacCCGcGGCACAc-- -3'
miRNA:   3'- -GCGGGUGCca----GGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 40537 0.67 0.985518
Target:  5'- cCGCUCACGGggaCCGaGgGCGGUCg -3'
miRNA:   3'- -GCGGGUGCCa--GGCcCgUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 43345 0.7 0.933333
Target:  5'- gCGCCCGCGGUCUGcuauucguccacgauGGaCACcAUCa -3'
miRNA:   3'- -GCGGGUGCCAGGC---------------CC-GUGuUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.