miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 86709 0.66 0.994348
Target:  5'- aGCCCACGaugUCGGGCAgGc-- -3'
miRNA:   3'- gCGGGUGCca-GGCCCGUgUuag -5'
30242 5' -51.5 NC_006273.1 + 86909 0.67 0.985518
Target:  5'- gGCCgCcCGGUCCGgcuGGCGCGAg- -3'
miRNA:   3'- gCGG-GuGCCAGGC---CCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 87982 0.66 0.994348
Target:  5'- gCGCCgACGccaCUGGGCGCGAa- -3'
miRNA:   3'- -GCGGgUGCca-GGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 88512 0.72 0.880999
Target:  5'- -uUCCACGcUCaCGGGCACGGUCa -3'
miRNA:   3'- gcGGGUGCcAG-GCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 88893 0.66 0.993458
Target:  5'- uCGCCCAU-GUCaccuauGGGCACAuUCu -3'
miRNA:   3'- -GCGGGUGcCAGg-----CCCGUGUuAG- -5'
30242 5' -51.5 NC_006273.1 + 89354 0.71 0.895043
Target:  5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3'
miRNA:   3'- gCGGGugCCA---GGCCCG----UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 90976 0.66 0.988719
Target:  5'- cCGCcgCCGCGGcgCCGGGCAgAc-- -3'
miRNA:   3'- -GCG--GGUGCCa-GGCCCGUgUuag -5'
30242 5' -51.5 NC_006273.1 + 94129 0.66 0.994348
Target:  5'- aGCCC-CGuG-CCGGGCAUgGGUCg -3'
miRNA:   3'- gCGGGuGC-CaGGCCCGUG-UUAG- -5'
30242 5' -51.5 NC_006273.1 + 94217 0.66 0.990098
Target:  5'- uGCCCGCcGcCCcccGGCGCAGUCc -3'
miRNA:   3'- gCGGGUGcCaGGc--CCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 94509 0.66 0.990098
Target:  5'- cCGUCCGCGGcCCGGGgGgAc-- -3'
miRNA:   3'- -GCGGGUGCCaGGCCCgUgUuag -5'
30242 5' -51.5 NC_006273.1 + 94672 0.68 0.974509
Target:  5'- -cCCCACGGg--GGGCugGGUCg -3'
miRNA:   3'- gcGGGUGCCaggCCCGugUUAG- -5'
30242 5' -51.5 NC_006273.1 + 98161 0.67 0.985518
Target:  5'- aGCUCcuGCGGUuuGGGCGCc--- -3'
miRNA:   3'- gCGGG--UGCCAggCCCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 99272 0.73 0.833426
Target:  5'- cCGCUCGCGGUCaaaaGCGCGAUCg -3'
miRNA:   3'- -GCGGGUGCCAGgcc-CGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 99297 0.67 0.979471
Target:  5'- cCGCCCACGGcgUCCucGGCGucGUCg -3'
miRNA:   3'- -GCGGGUGCC--AGGc-CCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 99361 0.68 0.968727
Target:  5'- gGCCCGCGGaUCGGccaGCGCuGUCu -3'
miRNA:   3'- gCGGGUGCCaGGCC---CGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 101022 0.68 0.975565
Target:  5'- gCGCCagcaucuguuguuguUGCGGUCCGGcGgACGAUCc -3'
miRNA:   3'- -GCGG---------------GUGCCAGGCC-CgUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 101757 0.67 0.983677
Target:  5'- uCGCCgGCGGcaUGGGCGC-GUCg -3'
miRNA:   3'- -GCGGgUGCCagGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 102391 0.72 0.880999
Target:  5'- uGUUCGCGGUaggcgUCGGGCACGAUg -3'
miRNA:   3'- gCGGGUGCCA-----GGCCCGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 102849 0.66 0.992352
Target:  5'- gCGUCCACGGgcacgCUguuggguGGGCACGcgCu -3'
miRNA:   3'- -GCGGGUGCCa----GG-------CCCGUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 103181 0.68 0.977089
Target:  5'- gGCCCgauguggcuGCGGccgCCGaGCACAAUCg -3'
miRNA:   3'- gCGGG---------UGCCa--GGCcCGUGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.