Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30242 | 5' | -51.5 | NC_006273.1 | + | 103266 | 0.66 | 0.988719 |
Target: 5'- gGCagguguaCGCGGUagaCGGGCAgCGGUCg -3' miRNA: 3'- gCGg------GUGCCAg--GCCCGU-GUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 106148 | 0.66 | 0.988719 |
Target: 5'- aCGCCCACuaugaGGgcgcagauaCCGGGCGCGu-- -3' miRNA: 3'- -GCGGGUG-----CCa--------GGCCCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 112266 | 0.69 | 0.962068 |
Target: 5'- uGCUCAUGGaCCGGGUGCGc-- -3' miRNA: 3'- gCGGGUGCCaGGCCCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 113141 | 0.7 | 0.943177 |
Target: 5'- uGCCCcuaaGCGGUggucgccacuaucacCCGGGCACuuuuGAUCg -3' miRNA: 3'- gCGGG----UGCCA---------------GGCCCGUG----UUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 116028 | 0.68 | 0.965511 |
Target: 5'- aGCCC-CGGgaaggCCuGGCGCAGUUc -3' miRNA: 3'- gCGGGuGCCa----GGcCCGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 116876 | 0.69 | 0.963473 |
Target: 5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3' miRNA: 3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 117187 | 0.66 | 0.993363 |
Target: 5'- gCGUCCGCcgagcGUUCGGGCgacagccGCAGUCa -3' miRNA: 3'- -GCGGGUGc----CAGGCCCG-------UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 117229 | 0.67 | 0.985518 |
Target: 5'- aCGCCgGCGGcUgGGGCGCGc-- -3' miRNA: 3'- -GCGGgUGCCaGgCCCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 117977 | 0.74 | 0.749626 |
Target: 5'- gGCCgagCACGG-CCGGGCACGAa- -3' miRNA: 3'- gCGG---GUGCCaGGCCCGUGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 121868 | 0.67 | 0.987195 |
Target: 5'- cCGCCCGCGcGccccCCGGGCAa---- -3' miRNA: 3'- -GCGGGUGC-Ca---GGCCCGUguuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 123626 | 0.67 | 0.985693 |
Target: 5'- aGCCUgggcguGCGGgaaagagagagaaggCCGGGCGCAcGUCa -3' miRNA: 3'- gCGGG------UGCCa--------------GGCCCGUGU-UAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 124470 | 0.66 | 0.990098 |
Target: 5'- gCGCUCGCGGUCCaGcCGCA-UCa -3' miRNA: 3'- -GCGGGUGCCAGGcCcGUGUuAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 129044 | 0.69 | 0.958394 |
Target: 5'- aGUCCAUcuuUCCGGGCACcAUCg -3' miRNA: 3'- gCGGGUGcc-AGGCCCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 129172 | 0.7 | 0.925841 |
Target: 5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3' miRNA: 3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 139609 | 0.67 | 0.981664 |
Target: 5'- gGCgC-CGGUUgGGGUGCGGUCa -3' miRNA: 3'- gCGgGuGCCAGgCCCGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 140247 | 0.71 | 0.895043 |
Target: 5'- aGCCgCgACGGUUCGGGCGgAGUUu -3' miRNA: 3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 142745 | 0.68 | 0.971434 |
Target: 5'- uGCUCACGGUCuggauguCGGGCcUGAUCc -3' miRNA: 3'- gCGGGUGCCAG-------GCCCGuGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 142841 | 0.67 | 0.979471 |
Target: 5'- uGCUCACGGcCaCGGGCuGCuGUCu -3' miRNA: 3'- gCGGGUGCCaG-GCCCG-UGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 145606 | 0.8 | 0.481744 |
Target: 5'- gGCCCgagcgACGGUCUGGGCgGCGGUCg -3' miRNA: 3'- gCGGG-----UGCCAGGCCCG-UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 146810 | 0.68 | 0.965177 |
Target: 5'- gCGCCCAUGG-CCGccacuguGGCGCGugaAUCg -3' miRNA: 3'- -GCGGGUGCCaGGC-------CCGUGU---UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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