Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30242 | 5' | -51.5 | NC_006273.1 | + | 147602 | 0.66 | 0.989288 |
Target: 5'- gGCUCACGacgcgguuugagcacGUCCGGGCG--GUCg -3' miRNA: 3'- gCGGGUGC---------------CAGGCCCGUguUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 150022 | 0.72 | 0.873622 |
Target: 5'- uGCUCACGGcuugcguggaggUCUGGGCGCGAg- -3' miRNA: 3'- gCGGGUGCC------------AGGCCCGUGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 150557 | 0.7 | 0.936392 |
Target: 5'- gGCCCACGGgccaaCCGucCACGGUCu -3' miRNA: 3'- gCGGGUGCCa----GGCccGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 151651 | 0.66 | 0.990098 |
Target: 5'- aGCgaCuCGGUgCCGGGCACGAa- -3' miRNA: 3'- gCGg-GuGCCA-GGCCCGUGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 156711 | 0.66 | 0.988574 |
Target: 5'- uGCCCGCGGaccCCGGccccuucucgcguGCGCGGUg -3' miRNA: 3'- gCGGGUGCCa--GGCC-------------CGUGUUAg -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 156873 | 0.67 | 0.985518 |
Target: 5'- gCGCCCGguGUCCGGGCGg---- -3' miRNA: 3'- -GCGGGUgcCAGGCCCGUguuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 164677 | 0.66 | 0.988719 |
Target: 5'- uGCUCG-GGUgCCGGGUACAccAUCu -3' miRNA: 3'- gCGGGUgCCA-GGCCCGUGU--UAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 165637 | 0.67 | 0.985518 |
Target: 5'- aCGCagCACGGUgCCGcGGCcCGGUCu -3' miRNA: 3'- -GCGg-GUGCCA-GGC-CCGuGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 166585 | 0.72 | 0.880999 |
Target: 5'- cCGgCUACGcGUCCGGGUucCAGUCg -3' miRNA: 3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 169570 | 0.67 | 0.979471 |
Target: 5'- uGUgUACGGUgCGGGagaACGAUCa -3' miRNA: 3'- gCGgGUGCCAgGCCCg--UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 170744 | 0.66 | 0.992459 |
Target: 5'- gCGCCCAacaGGUCCacggGGGUggcagcguggAUAAUCa -3' miRNA: 3'- -GCGGGUg--CCAGG----CCCG----------UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 170882 | 0.66 | 0.993458 |
Target: 5'- aGCCgGCGGg-CGGGU-CGAUCg -3' miRNA: 3'- gCGGgUGCCagGCCCGuGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 173656 | 0.68 | 0.968727 |
Target: 5'- gCGCUCGCGGUCacguccuGGGCAUccaccgcgccGAUCu -3' miRNA: 3'- -GCGGGUGCCAGg------CCCGUG----------UUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 176090 | 0.71 | 0.895043 |
Target: 5'- gGCCCACGaUCCGGGUu--AUCu -3' miRNA: 3'- gCGGGUGCcAGGCCCGuguUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 182300 | 0.67 | 0.983677 |
Target: 5'- -cCCCACGuGUCuUGGGCGC-GUCa -3' miRNA: 3'- gcGGGUGC-CAG-GCCCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 185487 | 0.7 | 0.943177 |
Target: 5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3' miRNA: 3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 188143 | 0.66 | 0.992459 |
Target: 5'- gGCCgGCGGgCCGGGuCGCcgaguuccgGGUCg -3' miRNA: 3'- gCGGgUGCCaGGCCC-GUG---------UUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 188847 | 0.66 | 0.992459 |
Target: 5'- aGCCCgACGGUgCGcGGCA--GUCu -3' miRNA: 3'- gCGGG-UGCCAgGC-CCGUguUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 188956 | 0.66 | 0.992459 |
Target: 5'- uCGUCCACGGggagaaCGGGCAguGg- -3' miRNA: 3'- -GCGGGUGCCag----GCCCGUguUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 193146 | 0.66 | 0.990098 |
Target: 5'- gGCCCAUGGUUCucuGGCACc--- -3' miRNA: 3'- gCGGGUGCCAGGc--CCGUGuuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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