miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 193980 0.71 0.901701
Target:  5'- uCGCCCugGGcUCCGacGGCGCcGUUg -3'
miRNA:   3'- -GCGGGugCC-AGGC--CCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 193146 0.66 0.990098
Target:  5'- gGCCCAUGGUUCucuGGCACc--- -3'
miRNA:   3'- gCGGGUGCCAGGc--CCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 188956 0.66 0.992459
Target:  5'- uCGUCCACGGggagaaCGGGCAguGg- -3'
miRNA:   3'- -GCGGGUGCCag----GCCCGUguUag -5'
30242 5' -51.5 NC_006273.1 + 188847 0.66 0.992459
Target:  5'- aGCCCgACGGUgCGcGGCA--GUCu -3'
miRNA:   3'- gCGGG-UGCCAgGC-CCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 188143 0.66 0.992459
Target:  5'- gGCCgGCGGgCCGGGuCGCcgaguuccgGGUCg -3'
miRNA:   3'- gCGGgUGCCaGGCCC-GUG---------UUAG- -5'
30242 5' -51.5 NC_006273.1 + 185487 0.7 0.943177
Target:  5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3'
miRNA:   3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 182300 0.67 0.983677
Target:  5'- -cCCCACGuGUCuUGGGCGC-GUCa -3'
miRNA:   3'- gcGGGUGC-CAG-GCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 176090 0.71 0.895043
Target:  5'- gGCCCACGaUCCGGGUu--AUCu -3'
miRNA:   3'- gCGGGUGCcAGGCCCGuguUAG- -5'
30242 5' -51.5 NC_006273.1 + 173656 0.68 0.968727
Target:  5'- gCGCUCGCGGUCacguccuGGGCAUccaccgcgccGAUCu -3'
miRNA:   3'- -GCGGGUGCCAGg------CCCGUG----------UUAG- -5'
30242 5' -51.5 NC_006273.1 + 170882 0.66 0.993458
Target:  5'- aGCCgGCGGg-CGGGU-CGAUCg -3'
miRNA:   3'- gCGGgUGCCagGCCCGuGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 170744 0.66 0.992459
Target:  5'- gCGCCCAacaGGUCCacggGGGUggcagcguggAUAAUCa -3'
miRNA:   3'- -GCGGGUg--CCAGG----CCCG----------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 169570 0.67 0.979471
Target:  5'- uGUgUACGGUgCGGGagaACGAUCa -3'
miRNA:   3'- gCGgGUGCCAgGCCCg--UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 166585 0.72 0.880999
Target:  5'- cCGgCUACGcGUCCGGGUucCAGUCg -3'
miRNA:   3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5'
30242 5' -51.5 NC_006273.1 + 165637 0.67 0.985518
Target:  5'- aCGCagCACGGUgCCGcGGCcCGGUCu -3'
miRNA:   3'- -GCGg-GUGCCA-GGC-CCGuGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 164677 0.66 0.988719
Target:  5'- uGCUCG-GGUgCCGGGUACAccAUCu -3'
miRNA:   3'- gCGGGUgCCA-GGCCCGUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 156873 0.67 0.985518
Target:  5'- gCGCCCGguGUCCGGGCGg---- -3'
miRNA:   3'- -GCGGGUgcCAGGCCCGUguuag -5'
30242 5' -51.5 NC_006273.1 + 156711 0.66 0.988574
Target:  5'- uGCCCGCGGaccCCGGccccuucucgcguGCGCGGUg -3'
miRNA:   3'- gCGGGUGCCa--GGCC-------------CGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 151651 0.66 0.990098
Target:  5'- aGCgaCuCGGUgCCGGGCACGAa- -3'
miRNA:   3'- gCGg-GuGCCA-GGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 150557 0.7 0.936392
Target:  5'- gGCCCACGGgccaaCCGucCACGGUCu -3'
miRNA:   3'- gCGGGUGCCa----GGCccGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 150022 0.72 0.873622
Target:  5'- uGCUCACGGcuugcguggaggUCUGGGCGCGAg- -3'
miRNA:   3'- gCGGGUGCC------------AGGCCCGUGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.