miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 147602 0.66 0.989288
Target:  5'- gGCUCACGacgcgguuugagcacGUCCGGGCG--GUCg -3'
miRNA:   3'- gCGGGUGC---------------CAGGCCCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 146810 0.68 0.965177
Target:  5'- gCGCCCAUGG-CCGccacuguGGCGCGugaAUCg -3'
miRNA:   3'- -GCGGGUGCCaGGC-------CCGUGU---UAG- -5'
30242 5' -51.5 NC_006273.1 + 145606 0.8 0.481744
Target:  5'- gGCCCgagcgACGGUCUGGGCgGCGGUCg -3'
miRNA:   3'- gCGGG-----UGCCAGGCCCG-UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 142841 0.67 0.979471
Target:  5'- uGCUCACGGcCaCGGGCuGCuGUCu -3'
miRNA:   3'- gCGGGUGCCaG-GCCCG-UGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 142745 0.68 0.971434
Target:  5'- uGCUCACGGUCuggauguCGGGCcUGAUCc -3'
miRNA:   3'- gCGGGUGCCAG-------GCCCGuGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 140247 0.71 0.895043
Target:  5'- aGCCgCgACGGUUCGGGCGgAGUUu -3'
miRNA:   3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5'
30242 5' -51.5 NC_006273.1 + 139609 0.67 0.981664
Target:  5'- gGCgC-CGGUUgGGGUGCGGUCa -3'
miRNA:   3'- gCGgGuGCCAGgCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 129172 0.7 0.925841
Target:  5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3'
miRNA:   3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 129044 0.69 0.958394
Target:  5'- aGUCCAUcuuUCCGGGCACcAUCg -3'
miRNA:   3'- gCGGGUGcc-AGGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 124470 0.66 0.990098
Target:  5'- gCGCUCGCGGUCCaGcCGCA-UCa -3'
miRNA:   3'- -GCGGGUGCCAGGcCcGUGUuAG- -5'
30242 5' -51.5 NC_006273.1 + 123626 0.67 0.985693
Target:  5'- aGCCUgggcguGCGGgaaagagagagaaggCCGGGCGCAcGUCa -3'
miRNA:   3'- gCGGG------UGCCa--------------GGCCCGUGU-UAG- -5'
30242 5' -51.5 NC_006273.1 + 121868 0.67 0.987195
Target:  5'- cCGCCCGCGcGccccCCGGGCAa---- -3'
miRNA:   3'- -GCGGGUGC-Ca---GGCCCGUguuag -5'
30242 5' -51.5 NC_006273.1 + 117977 0.74 0.749626
Target:  5'- gGCCgagCACGG-CCGGGCACGAa- -3'
miRNA:   3'- gCGG---GUGCCaGGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 117229 0.67 0.985518
Target:  5'- aCGCCgGCGGcUgGGGCGCGc-- -3'
miRNA:   3'- -GCGGgUGCCaGgCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 117187 0.66 0.993363
Target:  5'- gCGUCCGCcgagcGUUCGGGCgacagccGCAGUCa -3'
miRNA:   3'- -GCGGGUGc----CAGGCCCG-------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 116876 0.69 0.963473
Target:  5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3'
miRNA:   3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 116028 0.68 0.965511
Target:  5'- aGCCC-CGGgaaggCCuGGCGCAGUUc -3'
miRNA:   3'- gCGGGuGCCa----GGcCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 113141 0.7 0.943177
Target:  5'- uGCCCcuaaGCGGUggucgccacuaucacCCGGGCACuuuuGAUCg -3'
miRNA:   3'- gCGGG----UGCCA---------------GGCCCGUG----UUAG- -5'
30242 5' -51.5 NC_006273.1 + 112266 0.69 0.962068
Target:  5'- uGCUCAUGGaCCGGGUGCGc-- -3'
miRNA:   3'- gCGGGUGCCaGGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 106148 0.66 0.988719
Target:  5'- aCGCCCACuaugaGGgcgcagauaCCGGGCGCGu-- -3'
miRNA:   3'- -GCGGGUG-----CCa--------GGCCCGUGUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.