miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 84780 0.72 0.85014
Target:  5'- aCGCCCGCGGUCgaggaggagGGGUACGGa- -3'
miRNA:   3'- -GCGGGUGCCAGg--------CCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 195927 0.73 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 65813 0.73 0.841884
Target:  5'- uCGCCCcuGCGGUCCGcaaucggcGGCGCAGc- -3'
miRNA:   3'- -GCGGG--UGCCAGGC--------CCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 117977 0.74 0.749626
Target:  5'- gGCCgagCACGG-CCGGGCACGAa- -3'
miRNA:   3'- gCGG---GUGCCaGGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 81292 0.84 0.295223
Target:  5'- gCGUCCGCGGUUCGGGCACuaguUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCCGUGuu--AG- -5'
30242 5' -51.5 NC_006273.1 + 150557 0.7 0.936392
Target:  5'- gGCCCACGGgccaaCCGucCACGGUCu -3'
miRNA:   3'- gCGGGUGCCa----GGCccGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 232952 0.7 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
30242 5' -51.5 NC_006273.1 + 94672 0.68 0.974509
Target:  5'- -cCCCACGGg--GGGCugGGUCg -3'
miRNA:   3'- gcGGGUGCCaggCCCGugUUAG- -5'
30242 5' -51.5 NC_006273.1 + 47444 0.68 0.971724
Target:  5'- aCGCCCGCGagcgcggcgaGUUCGGGgACGAg- -3'
miRNA:   3'- -GCGGGUGC----------CAGGCCCgUGUUag -5'
30242 5' -51.5 NC_006273.1 + 81748 0.68 0.971724
Target:  5'- aGCCCugcGCGGagCCGGGCuGCGAa- -3'
miRNA:   3'- gCGGG---UGCCa-GGCCCG-UGUUag -5'
30242 5' -51.5 NC_006273.1 + 142745 0.68 0.971434
Target:  5'- uGCUCACGGUCuggauguCGGGCcUGAUCc -3'
miRNA:   3'- gCGGGUGCCAG-------GCCCGuGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 79947 0.68 0.965511
Target:  5'- -aCCCGCGucgCCGGGCACGGc- -3'
miRNA:   3'- gcGGGUGCca-GGCCCGUGUUag -5'
30242 5' -51.5 NC_006273.1 + 116028 0.68 0.965511
Target:  5'- aGCCC-CGGgaaggCCuGGCGCAGUUc -3'
miRNA:   3'- gCGGGuGCCa----GGcCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 116876 0.69 0.963473
Target:  5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3'
miRNA:   3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 211539 0.69 0.962068
Target:  5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3'
miRNA:   3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 112266 0.69 0.962068
Target:  5'- uGCUCAUGGaCCGGGUGCGc-- -3'
miRNA:   3'- gCGGGUGCCaGGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 64905 0.69 0.962068
Target:  5'- gGCUaCAUGuGUCCGGGCAUcuUCg -3'
miRNA:   3'- gCGG-GUGC-CAGGCCCGUGuuAG- -5'
30242 5' -51.5 NC_006273.1 + 78517 0.69 0.954484
Target:  5'- gCGCCgCcCGGacaCCGGGCGCcGUCa -3'
miRNA:   3'- -GCGG-GuGCCa--GGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 64248 0.69 0.945935
Target:  5'- gGCCCGCGGgcaCGGGCGu---- -3'
miRNA:   3'- gCGGGUGCCag-GCCCGUguuag -5'
30242 5' -51.5 NC_006273.1 + 113141 0.7 0.943177
Target:  5'- uGCCCcuaaGCGGUggucgccacuaucacCCGGGCACuuuuGAUCg -3'
miRNA:   3'- gCGGG----UGCCA---------------GGCCCGUG----UUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.