Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30242 | 5' | -51.5 | NC_006273.1 | + | 81748 | 0.68 | 0.971724 |
Target: 5'- aGCCCugcGCGGagCCGGGCuGCGAa- -3' miRNA: 3'- gCGGG---UGCCa-GGCCCG-UGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 142745 | 0.68 | 0.971434 |
Target: 5'- uGCUCACGGUCuggauguCGGGCcUGAUCc -3' miRNA: 3'- gCGGGUGCCAG-------GCCCGuGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 78517 | 0.69 | 0.954484 |
Target: 5'- gCGCCgCcCGGacaCCGGGCGCcGUCa -3' miRNA: 3'- -GCGG-GuGCCa--GGCCCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 64905 | 0.69 | 0.962068 |
Target: 5'- gGCUaCAUGuGUCCGGGCAUcuUCg -3' miRNA: 3'- gCGG-GUGC-CAGGCCCGUGuuAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 112266 | 0.69 | 0.962068 |
Target: 5'- uGCUCAUGGaCCGGGUGCGc-- -3' miRNA: 3'- gCGGGUGCCaGGCCCGUGUuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 211539 | 0.69 | 0.962068 |
Target: 5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3' miRNA: 3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 116876 | 0.69 | 0.963473 |
Target: 5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3' miRNA: 3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 116028 | 0.68 | 0.965511 |
Target: 5'- aGCCC-CGGgaaggCCuGGCGCAGUUc -3' miRNA: 3'- gCGGGuGCCa----GGcCCGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 79947 | 0.68 | 0.965511 |
Target: 5'- -aCCCGCGucgCCGGGCACGGc- -3' miRNA: 3'- gcGGGUGCca-GGCCCGUGUUag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 1076 | 0.71 | 0.901701 |
Target: 5'- -cCCCGCGGgccgCCGGGCGCc--- -3' miRNA: 3'- gcGGGUGCCa---GGCCCGUGuuag -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 193980 | 0.71 | 0.901701 |
Target: 5'- uCGCCCugGGcUCCGacGGCGCcGUUg -3' miRNA: 3'- -GCGGGugCC-AGGC--CCGUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 140247 | 0.71 | 0.895043 |
Target: 5'- aGCCgCgACGGUUCGGGCGgAGUUu -3' miRNA: 3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 89354 | 0.71 | 0.895043 |
Target: 5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3' miRNA: 3'- gCGGGugCCA---GGCCCG----UGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 166585 | 0.72 | 0.880999 |
Target: 5'- cCGgCUACGcGUCCGGGUucCAGUCg -3' miRNA: 3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 199661 | 0.72 | 0.880999 |
Target: 5'- gCGCCCGagaucUGGgucUCCGGGCACGggCa -3' miRNA: 3'- -GCGGGU-----GCC---AGGCCCGUGUuaG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 1034 | 0.73 | 0.841884 |
Target: 5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3' miRNA: 3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 99272 | 0.73 | 0.833426 |
Target: 5'- cCGCUCGCGGUCaaaaGCGCGAUCg -3' miRNA: 3'- -GCGGGUGCCAGgcc-CGUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 69544 | 0.74 | 0.749626 |
Target: 5'- gCGCCCACGGUCUGGccguCAUcGUCg -3' miRNA: 3'- -GCGGGUGCCAGGCCc---GUGuUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 15140 | 0.79 | 0.531661 |
Target: 5'- aCGUCCGCGG-CCGGGaCGCAGUUu -3' miRNA: 3'- -GCGGGUGCCaGGCCC-GUGUUAG- -5' |
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30242 | 5' | -51.5 | NC_006273.1 | + | 86709 | 0.66 | 0.994348 |
Target: 5'- aGCCCACGaugUCGGGCAgGc-- -3' miRNA: 3'- gCGGGUGCca-GGCCCGUgUuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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