miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 31376 0.67 0.981664
Target:  5'- aCGuCCCugGGUCCGaGGUcgGCAc-- -3'
miRNA:   3'- -GC-GGGugCCAGGC-CCG--UGUuag -5'
30242 5' -51.5 NC_006273.1 + 139609 0.67 0.981664
Target:  5'- gGCgC-CGGUUgGGGUGCGGUCa -3'
miRNA:   3'- gCGgGuGCCAGgCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 16872 0.67 0.983677
Target:  5'- uCGCCgcuacgaaCACGGUCUGcGGCGCGc-- -3'
miRNA:   3'- -GCGG--------GUGCCAGGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 57041 0.67 0.983677
Target:  5'- gCGUCCGCGGcCCGcGaGCGCAu-- -3'
miRNA:   3'- -GCGGGUGCCaGGC-C-CGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 69924 0.69 0.954484
Target:  5'- gCGCCCguuGGUgaauguuaCCGGGCGCGAUg -3'
miRNA:   3'- -GCGGGug-CCA--------GGCCCGUGUUAg -5'
30242 5' -51.5 NC_006273.1 + 29073 0.69 0.954484
Target:  5'- gGCCC-CGGUCgCGGGUAguAUg -3'
miRNA:   3'- gCGGGuGCCAG-GCCCGUguUAg -5'
30242 5' -51.5 NC_006273.1 + 15140 0.79 0.531661
Target:  5'- aCGUCCGCGG-CCGGGaCGCAGUUu -3'
miRNA:   3'- -GCGGGUGCCaGGCCC-GUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 69544 0.74 0.749626
Target:  5'- gCGCCCACGGUCUGGccguCAUcGUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCc---GUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 99272 0.73 0.833426
Target:  5'- cCGCUCGCGGUCaaaaGCGCGAUCg -3'
miRNA:   3'- -GCGGGUGCCAGgcc-CGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 1034 0.73 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 199661 0.72 0.880999
Target:  5'- gCGCCCGagaucUGGgucUCCGGGCACGggCa -3'
miRNA:   3'- -GCGGGU-----GCC---AGGCCCGUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 166585 0.72 0.880999
Target:  5'- cCGgCUACGcGUCCGGGUucCAGUCg -3'
miRNA:   3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5'
30242 5' -51.5 NC_006273.1 + 89354 0.71 0.895043
Target:  5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3'
miRNA:   3'- gCGGGugCCA---GGCCCG----UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 140247 0.71 0.895043
Target:  5'- aGCCgCgACGGUUCGGGCGgAGUUu -3'
miRNA:   3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5'
30242 5' -51.5 NC_006273.1 + 193980 0.71 0.901701
Target:  5'- uCGCCCugGGcUCCGacGGCGCcGUUg -3'
miRNA:   3'- -GCGGGugCC-AGGC--CCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 1076 0.71 0.901701
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 46338 0.7 0.925841
Target:  5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3'
miRNA:   3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 129172 0.7 0.925841
Target:  5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3'
miRNA:   3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 38059 0.7 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
30242 5' -51.5 NC_006273.1 + 185487 0.7 0.943177
Target:  5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3'
miRNA:   3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.