miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 173656 0.68 0.968727
Target:  5'- gCGCUCGCGGUCacguccuGGGCAUccaccgcgccGAUCu -3'
miRNA:   3'- -GCGGGUGCCAGg------CCCGUG----------UUAG- -5'
30242 5' -51.5 NC_006273.1 + 82006 0.68 0.965511
Target:  5'- gGCCaACGGUCgacgcaGGGCACGcgCg -3'
miRNA:   3'- gCGGgUGCCAGg-----CCCGUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 1076 0.71 0.901701
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
30242 5' -51.5 NC_006273.1 + 99272 0.73 0.833426
Target:  5'- cCGCUCGCGGUCaaaaGCGCGAUCg -3'
miRNA:   3'- -GCGGGUGCCAGgcc-CGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 40408 0.67 0.985518
Target:  5'- aCGCCCGCGacacacCCGcGGCACAc-- -3'
miRNA:   3'- -GCGGGUGCca----GGC-CCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 99297 0.67 0.979471
Target:  5'- cCGCCCACGGcgUCCucGGCGucGUCg -3'
miRNA:   3'- -GCGGGUGCC--AGGc-CCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 129044 0.69 0.958394
Target:  5'- aGUCCAUcuuUCCGGGCACcAUCg -3'
miRNA:   3'- gCGGGUGcc-AGGCCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 69544 0.74 0.749626
Target:  5'- gCGCCCACGGUCUGGccguCAUcGUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCc---GUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 213692 0.68 0.977089
Target:  5'- uCGCaggaGCGGUCCGaguGGCGCAGgUCg -3'
miRNA:   3'- -GCGgg--UGCCAGGC---CCGUGUU-AG- -5'
30242 5' -51.5 NC_006273.1 + 15140 0.79 0.531661
Target:  5'- aCGUCCGCGG-CCGGGaCGCAGUUu -3'
miRNA:   3'- -GCGGGUGCCaGGCCC-GUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 146810 0.68 0.965177
Target:  5'- gCGCCCAUGG-CCGccacuguGGCGCGugaAUCg -3'
miRNA:   3'- -GCGGGUGCCaGGC-------CCGUGU---UAG- -5'
30242 5' -51.5 NC_006273.1 + 205349 0.68 0.971434
Target:  5'- uGCCCGUGGUcuggccgCCGGGCugGAa- -3'
miRNA:   3'- gCGGGUGCCA-------GGCCCGugUUag -5'
30242 5' -51.5 NC_006273.1 + 185487 0.7 0.943177
Target:  5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3'
miRNA:   3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 46338 0.7 0.925841
Target:  5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3'
miRNA:   3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 89354 0.71 0.895043
Target:  5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3'
miRNA:   3'- gCGGGugCCA---GGCCCG----UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 1034 0.73 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 2363 0.67 0.987195
Target:  5'- uGCgCGCGGgcgugCUGGGCGCGc-- -3'
miRNA:   3'- gCGgGUGCCa----GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 156873 0.67 0.985518
Target:  5'- gCGCCCGguGUCCGGGCGg---- -3'
miRNA:   3'- -GCGGGUgcCAGGCCCGUguuag -5'
30242 5' -51.5 NC_006273.1 + 57041 0.67 0.983677
Target:  5'- gCGUCCGCGGcCCGcGaGCGCAu-- -3'
miRNA:   3'- -GCGGGUGCCaGGC-C-CGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 31376 0.67 0.981664
Target:  5'- aCGuCCCugGGUCCGaGGUcgGCAc-- -3'
miRNA:   3'- -GC-GGGugCCAGGC-CCG--UGUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.