miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30242 5' -51.5 NC_006273.1 + 145606 0.8 0.481744
Target:  5'- gGCCCgagcgACGGUCUGGGCgGCGGUCg -3'
miRNA:   3'- gCGGG-----UGCCAGGCCCG-UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 78689 0.66 0.993458
Target:  5'- gGUCCGCGGgcaccgCCGccggaGGCGCGGUUc -3'
miRNA:   3'- gCGGGUGCCa-----GGC-----CCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 139609 0.67 0.981664
Target:  5'- gGCgC-CGGUUgGGGUGCGGUCa -3'
miRNA:   3'- gCGgGuGCCAGgCCCGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 2363 0.67 0.987195
Target:  5'- uGCgCGCGGgcgugCUGGGCGCGc-- -3'
miRNA:   3'- gCGgGUGCCa----GGCCCGUGUuag -5'
30242 5' -51.5 NC_006273.1 + 156873 0.67 0.985518
Target:  5'- gCGCCCGguGUCCGGGCGg---- -3'
miRNA:   3'- -GCGGGUgcCAGGCCCGUguuag -5'
30242 5' -51.5 NC_006273.1 + 213692 0.68 0.977089
Target:  5'- uCGCaggaGCGGUCCGaguGGCGCAGgUCg -3'
miRNA:   3'- -GCGgg--UGCCAGGC---CCGUGUU-AG- -5'
30242 5' -51.5 NC_006273.1 + 173656 0.68 0.968727
Target:  5'- gCGCUCGCGGUCacguccuGGGCAUccaccgcgccGAUCu -3'
miRNA:   3'- -GCGGGUGCCAGg------CCCGUG----------UUAG- -5'
30242 5' -51.5 NC_006273.1 + 82006 0.68 0.965511
Target:  5'- gGCCaACGGUCgacgcaGGGCACGcgCg -3'
miRNA:   3'- gCGGgUGCCAGg-----CCCGUGUuaG- -5'
30242 5' -51.5 NC_006273.1 + 185487 0.7 0.943177
Target:  5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3'
miRNA:   3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 46338 0.7 0.925841
Target:  5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3'
miRNA:   3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5'
30242 5' -51.5 NC_006273.1 + 89354 0.71 0.895043
Target:  5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3'
miRNA:   3'- gCGGGugCCA---GGCCCG----UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 1034 0.73 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
30242 5' -51.5 NC_006273.1 + 211155 0.66 0.992459
Target:  5'- gGCCCGCGGUUCuaacaGGCuuGAUUg -3'
miRNA:   3'- gCGGGUGCCAGGc----CCGugUUAG- -5'
30242 5' -51.5 NC_006273.1 + 188143 0.66 0.992459
Target:  5'- gGCCgGCGGgCCGGGuCGCcgaguuccgGGUCg -3'
miRNA:   3'- gCGGgUGCCaGGCCC-GUG---------UUAG- -5'
30242 5' -51.5 NC_006273.1 + 170744 0.66 0.992459
Target:  5'- gCGCCCAacaGGUCCacggGGGUggcagcguggAUAAUCa -3'
miRNA:   3'- -GCGGGUg--CCAGG----CCCG----------UGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 188847 0.66 0.992459
Target:  5'- aGCCCgACGGUgCGcGGCA--GUCu -3'
miRNA:   3'- gCGGG-UGCCAgGC-CCGUguUAG- -5'
30242 5' -51.5 NC_006273.1 + 94672 0.68 0.974509
Target:  5'- -cCCCACGGg--GGGCugGGUCg -3'
miRNA:   3'- gcGGGUGCCaggCCCGugUUAG- -5'
30242 5' -51.5 NC_006273.1 + 101022 0.68 0.975565
Target:  5'- gCGCCagcaucuguuguuguUGCGGUCCGGcGgACGAUCc -3'
miRNA:   3'- -GCGG---------------GUGCCAGGCC-CgUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 150557 0.7 0.936392
Target:  5'- gGCCCACGGgccaaCCGucCACGGUCu -3'
miRNA:   3'- gCGGGUGCCa----GGCccGUGUUAG- -5'
30242 5' -51.5 NC_006273.1 + 205230 0.68 0.975565
Target:  5'- aCGCCCAuCGGcgucccggaaucguaUaCCGGGCACAc-- -3'
miRNA:   3'- -GCGGGU-GCC---------------A-GGCCCGUGUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.