miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 84169 0.66 0.974229
Target:  5'- cGGC-CCAGAGCGUgucgGCCgauuucgaaauggagGCCCUgaugauccgCGGCg -3'
miRNA:   3'- -CCGcGGUUUUGCG----UGGa--------------UGGGA---------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 114815 0.66 0.973974
Target:  5'- -cCGgCAAGACGC-CUUGCCCg-GGCc -3'
miRNA:   3'- ccGCgGUUUUGCGuGGAUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 83391 0.66 0.973974
Target:  5'- gGGCugcuGCCGccGC-CACCcgGCCCggCGGCg -3'
miRNA:   3'- -CCG----CGGUuuUGcGUGGa-UGGGa-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 170945 0.66 0.973974
Target:  5'- aGgGCCAGGuUGCACaugCUACCCa-GGCg -3'
miRNA:   3'- cCgCGGUUUuGCGUG---GAUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 32054 0.66 0.973974
Target:  5'- uGGCGCgGuugcAAGCGCA---GCCCUCGaGUc -3'
miRNA:   3'- -CCGCGgU----UUUGCGUggaUGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 106036 0.66 0.973974
Target:  5'- --gGCCuu-ACGCAUCUACUa-CGGCg -3'
miRNA:   3'- ccgCGGuuuUGCGUGGAUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 162004 0.66 0.973974
Target:  5'- uGGCuGCCc--GCGCGCUUugcgACUCUgGGCc -3'
miRNA:   3'- -CCG-CGGuuuUGCGUGGA----UGGGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 129161 0.66 0.973974
Target:  5'- cGGCGCC---GCugGCC-ACCCgCGGCa -3'
miRNA:   3'- -CCGCGGuuuUGcgUGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 141473 0.66 0.973974
Target:  5'- cGCGCau--GCGCACCggguCCCcUGGUu -3'
miRNA:   3'- cCGCGguuuUGCGUGGau--GGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 122241 0.66 0.973974
Target:  5'- aGGCGaCUGAGcgGCGCGCC--CUCUgCGGCc -3'
miRNA:   3'- -CCGC-GGUUU--UGCGUGGauGGGA-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 93587 0.66 0.973974
Target:  5'- cGGCgGCCu--GCGCgGCCUguACCg-CGGCu -3'
miRNA:   3'- -CCG-CGGuuuUGCG-UGGA--UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 163163 0.66 0.973974
Target:  5'- aGCGCCAucuggauGCGCGCUcGCUggUGGCc -3'
miRNA:   3'- cCGCGGUuu-----UGCGUGGaUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 29831 0.66 0.973974
Target:  5'- cGGCaGCCAcggaggAGACGagagaACCUACCUacuucacgugCGGCu -3'
miRNA:   3'- -CCG-CGGU------UUUGCg----UGGAUGGGa---------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 112116 0.66 0.973974
Target:  5'- cGGgGCCGcguGGACuCACCaGCCguauUUCGGCg -3'
miRNA:   3'- -CCgCGGU---UUUGcGUGGaUGG----GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 91455 0.66 0.973974
Target:  5'- cGGCGCUA--GCGCGgUUAguUCCUCguGGCu -3'
miRNA:   3'- -CCGCGGUuuUGCGUgGAU--GGGAG--CCG- -5'
30243 3' -55.5 NC_006273.1 + 41533 0.66 0.973974
Target:  5'- cGGCGCCAgcagGAACGUua--ACUC-CGGCg -3'
miRNA:   3'- -CCGCGGU----UUUGCGuggaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 139343 0.66 0.973717
Target:  5'- cGGUGCCcgcGAcuCGCcCCUccuccaagauggcGCCgCUCGGCc -3'
miRNA:   3'- -CCGCGG---UUuuGCGuGGA-------------UGG-GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 134214 0.66 0.973458
Target:  5'- aGGCGCCuacggccgccACGC-CCgUGCCCgaGGCc -3'
miRNA:   3'- -CCGCGGuuu-------UGCGuGG-AUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 84598 0.66 0.973198
Target:  5'- uGCGCgAAAGCuucggccggcugcuGCACCacagcGCCCggCGGCu -3'
miRNA:   3'- cCGCGgUUUUG--------------CGUGGa----UGGGa-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 65705 0.66 0.971321
Target:  5'- cGGCGCUA--ACGCGgCaacgGCCa-CGGCg -3'
miRNA:   3'- -CCGCGGUuuUGCGUgGa---UGGgaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.