miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 1800 0.66 0.968478
Target:  5'- gGGcCGCCAAccuguCGuCACCuUACUgUUGGCg -3'
miRNA:   3'- -CC-GCGGUUuu---GC-GUGG-AUGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 65705 0.66 0.971321
Target:  5'- cGGCGCUA--ACGCGgCaacgGCCa-CGGCg -3'
miRNA:   3'- -CCGCGGUuuUGCGUgGa---UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 84169 0.66 0.974229
Target:  5'- cGGC-CCAGAGCGUgucgGCCgauuucgaaauggagGCCCUgaugauccgCGGCg -3'
miRNA:   3'- -CCGcGGUUUUGCG----UGGa--------------UGGGA---------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 47748 0.66 0.971321
Target:  5'- gGGCGCCucucggcAGACGgGCCUgacACCCaaGcGCu -3'
miRNA:   3'- -CCGCGGu------UUUGCgUGGA---UGGGagC-CG- -5'
30243 3' -55.5 NC_006273.1 + 189836 0.66 0.96544
Target:  5'- cGGCcacGCCGGGugGCAUCUGCggcaUGGCg -3'
miRNA:   3'- -CCG---CGGUUUugCGUGGAUGgga-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 143315 0.66 0.965126
Target:  5'- cGGCGCUggGuaACGUGCUgggcuuuUGCCUcaugCGGCu -3'
miRNA:   3'- -CCGCGGuuU--UGCGUGG-------AUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 155084 0.66 0.96544
Target:  5'- gGGCgGCCAGAGCGUGCCggUAUCUcaaCGGa -3'
miRNA:   3'- -CCG-CGGUUUUGCGUGG--AUGGGa--GCCg -5'
30243 3' -55.5 NC_006273.1 + 70163 0.66 0.96544
Target:  5'- -aCGCCGAG----ACCUACgCCUCGGUg -3'
miRNA:   3'- ccGCGGUUUugcgUGGAUG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 153370 0.66 0.968478
Target:  5'- cGGCGgC---ACGCGCgUGCCCUgcgucgaccguUGGCc -3'
miRNA:   3'- -CCGCgGuuuUGCGUGgAUGGGA-----------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 40728 0.66 0.962203
Target:  5'- gGGCGaCAAAACGgaCGCCgagGCUgaCGGCu -3'
miRNA:   3'- -CCGCgGUUUUGC--GUGGa--UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 171355 0.66 0.968478
Target:  5'- cGCGCCAccaAAAC-CGCCgcGCCCauggUGGCu -3'
miRNA:   3'- cCGCGGU---UUUGcGUGGa-UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 36019 0.66 0.962203
Target:  5'- cGCGCC-AGAUGCugCUGaaCUUGGg -3'
miRNA:   3'- cCGCGGuUUUGCGugGAUggGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 196746 0.66 0.968478
Target:  5'- cGGCGCCGcacccCGCGuCgCUGCUgaCGGCc -3'
miRNA:   3'- -CCGCGGUuuu--GCGU-G-GAUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 40590 0.66 0.96544
Target:  5'- aGGUuUCAAggaaggaacaccGACGCGgCUGCCC-CGGCc -3'
miRNA:   3'- -CCGcGGUU------------UUGCGUgGAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 101858 0.66 0.96544
Target:  5'- uGGC-CCAGAGCGCGuagCUGUgCUCGGUg -3'
miRNA:   3'- -CCGcGGUUUUGCGUg--GAUGgGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 108847 0.66 0.962203
Target:  5'- cGGCuuCCAAGACG-ACCUagucucccGCaCCUUGGCu -3'
miRNA:   3'- -CCGc-GGUUUUGCgUGGA--------UG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 21668 0.66 0.962203
Target:  5'- cGGCGCUGGuggccGACGUgcacgACCUgcGCCaCUCGGa -3'
miRNA:   3'- -CCGCGGUU-----UUGCG-----UGGA--UGG-GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 102149 0.66 0.963522
Target:  5'- uGGCGCCGucGC-CACCgUacaggugauaggcgaGCaCCUCGGUg -3'
miRNA:   3'- -CCGCGGUuuUGcGUGG-A---------------UG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 137789 0.66 0.969638
Target:  5'- cGGCGUCGucGACGCaucugucauuuACCUACCUuguaccaacugagcuUCGGa -3'
miRNA:   3'- -CCGCGGUu-UUGCG-----------UGGAUGGG---------------AGCCg -5'
30243 3' -55.5 NC_006273.1 + 51932 0.66 0.96544
Target:  5'- cGGaCGUgGGAGCGCACCU-CCaC-CGGg -3'
miRNA:   3'- -CC-GCGgUUUUGCGUGGAuGG-GaGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.