miRNA display CGI


Results 41 - 60 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 170283 0.66 0.969351
Target:  5'- -aCGCCGAAGCccgugagcaccaucaGCACCUgauggagACCCUC-GCa -3'
miRNA:   3'- ccGCGGUUUUG---------------CGUGGA-------UGGGAGcCG- -5'
30243 3' -55.5 NC_006273.1 + 14034 0.66 0.96544
Target:  5'- aGCGCCG--AUGUACCUGCagCUCGa- -3'
miRNA:   3'- cCGCGGUuuUGCGUGGAUGg-GAGCcg -5'
30243 3' -55.5 NC_006273.1 + 195181 0.66 0.96544
Target:  5'- gGGCGCCAAAACGCcgucggacGCCgugcagaacAUCCUCc-- -3'
miRNA:   3'- -CCGCGGUUUUGCG--------UGGa--------UGGGAGccg -5'
30243 3' -55.5 NC_006273.1 + 21696 0.66 0.96544
Target:  5'- uGUGCCAGc-CGuCGCCgcagGCCUuugUCGGCg -3'
miRNA:   3'- cCGCGGUUuuGC-GUGGa---UGGG---AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 67959 0.66 0.966679
Target:  5'- -cCGCCgAGAGCGCGCCcGCCacuguggaagucuguCUgGGCg -3'
miRNA:   3'- ccGCGG-UUUUGCGUGGaUGG---------------GAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 143315 0.66 0.965126
Target:  5'- cGGCGCUggGuaACGUGCUgggcuuuUGCCUcaugCGGCu -3'
miRNA:   3'- -CCGCGGuuU--UGCGUGG-------AUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 130432 0.66 0.962203
Target:  5'- cGCGUCAugauGGCGCuucGCUUGCCCgagcagaCGGUg -3'
miRNA:   3'- cCGCGGUu---UUGCG---UGGAUGGGa------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 138748 0.66 0.962203
Target:  5'- gGGCGUgAGguucuGGCuGCACCcGCCCgaucccucgUCGGCu -3'
miRNA:   3'- -CCGCGgUU-----UUG-CGUGGaUGGG---------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 134214 0.66 0.973458
Target:  5'- aGGCGCCuacggccgccACGC-CCgUGCCCgaGGCc -3'
miRNA:   3'- -CCGCGGuuu-------UGCGuGG-AUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 170945 0.66 0.973974
Target:  5'- aGgGCCAGGuUGCACaugCUACCCa-GGCg -3'
miRNA:   3'- cCgCGGUUUuGCGUG---GAUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 102654 0.66 0.971321
Target:  5'- cGGCGUgAuGAUGCGCagccccaguUUGCCCUugcagCGGCa -3'
miRNA:   3'- -CCGCGgUuUUGCGUG---------GAUGGGA-----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 153370 0.66 0.968478
Target:  5'- cGGCGgC---ACGCGCgUGCCCUgcgucgaccguUGGCc -3'
miRNA:   3'- -CCGCgGuuuUGCGUGgAUGGGA-----------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 137789 0.66 0.969638
Target:  5'- cGGCGUCGucGACGCaucugucauuuACCUACCUuguaccaacugagcuUCGGa -3'
miRNA:   3'- -CCGCGGUu-UUGCG-----------UGGAUGGG---------------AGCCg -5'
30243 3' -55.5 NC_006273.1 + 47748 0.66 0.971321
Target:  5'- gGGCGCCucucggcAGACGgGCCUgacACCCaaGcGCu -3'
miRNA:   3'- -CCGCGGu------UUUGCgUGGA---UGGGagC-CG- -5'
30243 3' -55.5 NC_006273.1 + 196794 0.66 0.96544
Target:  5'- cGGCacaGCCGcAGGCGC-UCUGCCagUUGGCg -3'
miRNA:   3'- -CCG---CGGU-UUUGCGuGGAUGGg-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 171355 0.66 0.968478
Target:  5'- cGCGCCAccaAAAC-CGCCgcGCCCauggUGGCu -3'
miRNA:   3'- cCGCGGU---UUUGcGUGGa-UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 189836 0.66 0.96544
Target:  5'- cGGCcacGCCGGGugGCAUCUGCggcaUGGCg -3'
miRNA:   3'- -CCG---CGGUUUugCGUGGAUGgga-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 1800 0.66 0.968478
Target:  5'- gGGcCGCCAAccuguCGuCACCuUACUgUUGGCg -3'
miRNA:   3'- -CC-GCGGUUuu---GC-GUGG-AUGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 70163 0.66 0.96544
Target:  5'- -aCGCCGAG----ACCUACgCCUCGGUg -3'
miRNA:   3'- ccGCGGUUUugcgUGGAUG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 232257 0.66 0.962203
Target:  5'- --aGCCA--AUGCaAUCUugUCUCGGCa -3'
miRNA:   3'- ccgCGGUuuUGCG-UGGAugGGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.